Variovorax paradoxus S110: Vapar_3118
Help
Entry
Vapar_3118 CDS
T00916
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03030
DNA replication
vap03430
Mismatch repair
vap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Vapar_3118
03430 Mismatch repair
Vapar_3118
03440 Homologous recombination
Vapar_3118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vap03032
]
Vapar_3118
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_3118
Enzymes [BR:
vap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Vapar_3118
DNA replication proteins [BR:
vap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Vapar_3118
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Vapar_3118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ACS19737
UniProt:
C5CPZ8
LinkDB
All DBs
Position
1:complement(3276397..3279915)
Genome browser
AA seq
1172 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKP
VIGAEIFIEGLGKEPGVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQAACKLEWL
QELQGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQRAGRPEDEPH
VIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVRKFTEEQYFK
SSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDEFFRQE
SFLGLEERLAHLYPDPARREAERPRYVERLEFEINTILNMGFPGYFLIVGDFIKWAKNNG
CPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVI
DYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGQPVTIQY
PPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAPG
KLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEFIVKRHKGQE
NFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGP
MDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLR
RAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKSHAAAYSLLA
YHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNRGNYRFEPVT
DKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRTVEALIKAGA
FDSIQQNRASLIASVDRAFEFAAATEANAAQVDIFGDSEHGSATQEPELVDATPWGVKER
LTFEKTAVGFYLSGHLFDEVAHEVRRFCKREIGDLMDTREQQVIAGIVSDFRVINGQRGR
LAIFKLDDKSDAIDATADEALINANRNTLKDDELVIVSGRLQPGRGGFEARFQVQQVWDL
ATARCRFGKFLRVAVNGKAPDIARLVKDFPPRTEQSEHGDLVQGLPVRLSMARGGAQVEL
QLGERAKFFPTDAALASWTAQAEAGKASVVYE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgcctgcacaccgagttttccgtcgtcgacggcaccaaccgcatc
gacgaagtcgtcaaggccgccgctgccgacaagcagcccgcactggccatcaccgacctg
aacaacctgttcggggcggtcaagttctacaagcaggggcgaagcaagggcgtcaagccg
gtcatcggcgctgaaatcttcatcgaaggcctgggcaaggagcccggcgtgctcacccgc
atcgtgctgctggtgcagaacatggagggctacctgcacctgtccgagctgctggcgcgc
gcctggacgcagaacgtgggccgcggccagtcgcaggcggcctgcaagctcgaatggctc
caggagctgcagggcggactgatcgcgctgtcgggcgcgcaggccggccccctgggcgca
ccgctgctgcaggggcaggaagagcgcgccgccgagctggcgctgcagctggcgggcatg
ttcccgcatcgtttctacatcgagctgcagcgcgcgggccgccccgaggacgagccgcac
gtgattgccgccgtgaagctcgcggcccggctgcgcctgccggtggtcgcgacgcacccg
gtgcagtttgccgaacgccaggactacgaggcgcacgaggcgcgcgtctgcatctcggaa
ggtgaaatcctcggcaacccgcgccgcgtgcgcaagttcaccgaggagcagtacttcaag
tcgagcgccgagatgcaggcgctctttgccgacgtgccgagcgcgctggccaacacggtc
gagatcgccaagcgctgcaacctcacgctggtgctcggcaagccgcagctgcccgatttt
ccgacgcccttcatcagcgaaggcgtgcgcatgccgatcgacgagttcttccgccaggag
tccttcctgggcctggaagaacgcctggcgcacctctatcccgatccggccaggcgcgag
gccgagcggccacgctatgtggagcggctcgagttcgagatcaacacgatcctgaacatg
ggcttcccgggctacttcctgatcgtgggcgacttcatcaagtgggccaagaacaacggc
tgcccggtgggcccgggccggggctcgggcgccggttcgctggtggcctatgcgctgaag
atcaccgacctcgatccgcttgaatacaagctgctgttcgaacgtttcctgaaccccgag
cgcgtctcgatgcccgacttcgacatcgacttctgccagggcaaccgcgaccgcgtgatc
gactacgtcaaggacaagtacggccgcgatgccgtgagccagatcgccaccttcggaacg
atggccgcgcgcgccgccatccgcgacgtggggcgcgtgctcgacatgagctacatgttc
tgcgacggcatcagcaagctcattcccaacaagccgggccagcccgtcaccatccagtat
ccgcccaaccccaaggtggaaggcgacaagaacaactacgccatcgagatggagccgcag
ctcgcggcgcgcatcgagaaggaagaagaagtgcgcatgctggtcgagctcgcgcagaag
ctcgaaggcatgacccgcaacatcggcatgcacgcgggcggcgtgctgattgcgcccggc
aagctcaccgatttctgcccgctctaccagcagcccggcagcgactcggccgtgagccag
tacgacaaggacgacgtggaggccatcggcctcgtgaagttcgacttcctgggcctggcc
acgctcacgatcctcgagatcgcgaaagagttcatcgtcaagcgccacaagggccaggag
aacttcgcgtacgagaacatcaagctcgacgaccgcgagacctacaagctgttctccgag
ggcaagaccgaagcggtgttccagtttgaaagccgcggcatgcagggcatgctgaaggat
gcgcggccgacgcgcctggaggacctgatcgcgctcaacgcgctgtaccgtccgggcccg
atggacctgatcccgagcttcgtggcgcgcaagcacggccgcgaagaggtggagtacccg
cacccggccgtggccgagatgctctccgagacctacgggatcatggtctaccaggagcag
gtgatgcagaccgcgcagatcctgggcggctattcgctcggcggcgccgacctgctgcgc
cgcgccatgggcaagaaaaagctcgaggagatggccgagcaccgcgagaaattccgcgcg
ggcgcgctctcgacgcacggcattccccaggacaaggccgacgagatcttcgacttgatg
gagaagttcgcgggctacggcttcaacaagtcgcacgccgccgcctactctctgctggcg
taccacaccggttggctcaaggtccactacacggccgagttcttctgcgccaacatgacc
gtggaaatggacgacaccgacaagctcaaggtgctgttcgaggacgcgcagaagaacttc
ggcatcaccttcgagccgccggacgtgaaccgcggcaactaccgtttcgagccggtcacc
gacaaggtgatccgctatggcctgggggcggtcaagggcacgggccagctcgcggtcgag
gccgtggtgcgcgcacgcgaagaaggcgggcccttcaagagcttgttcgatttctgcgtg
cgcatcgaccgccagcgcatcaacaagcgcacggtcgaagcgctcatcaaggccggcgcc
ttcgattcgatccagcagaaccgcgcctcgctcatcgcctcggtcgaccgcgccttcgag
tttgcggccgccaccgaggccaatgccgcgcaggtcgacatcttcggcgacagcgagcac
ggctccgccacgcaggagcccgagctggtggacgccacgccctggggcgtgaaggagcgg
ctcaccttcgagaagacggccgtcggcttctatctctcaggccacctgttcgacgaggtg
gcgcacgaggtgcggcgcttctgcaagcgcgagatcggcgacctcatggacacgcgcgag
cagcaggtgatcgcgggcatcgtgagcgatttccgcgtgatcaacggccagcgcggccgg
ctggcgatcttcaagctcgacgacaagtccgatgccatcgacgccaccgccgacgaggcg
ctgatcaacgcgaaccgcaacaccctgaaggacgacgaactggtgatcgtgagcggccgg
ctgcagccgggccgcggcggcttcgaggcccgcttccaggtgcagcaggtgtgggacctg
gccaccgcgcgctgccgcttcggaaaattcctgcgcgtggcggtcaatggcaaggcgccc
gacatcgcgcgcctggtgaaagactttccgccgcgcaccgagcagagcgagcacggcgac
ctcgtgcaggggctgccggtgcgcctgtcgatggcgcgcggcggtgcgcaggtcgagctg
cagctgggcgagcgcgcgaagttcttcccgaccgacgccgcgctcgcgagctggacggcg
caggcggaagccggcaaggcctcggtggtctacgagtga
DBGET
integrated database retrieval system
