Variovorax paradoxus S110: Vapar_3514
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Entry
Vapar_3514 CDS
T00916
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vapar_3514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vap03019
]
Vapar_3514
03016 Transfer RNA biogenesis [BR:
vap03016
]
Vapar_3514
Enzymes [BR:
vap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Vapar_3514
Messenger RNA biogenesis [BR:
vap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Vapar_3514
Transfer RNA biogenesis [BR:
vap03016
]
Prokaryotic type
tRNA degradation factors
Vapar_3514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
DUF5813
Motif
Other DBs
NCBI-ProteinID:
ACS20131
UniProt:
C5CT24
LinkDB
All DBs
Position
1:complement(3703781..3706099)
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AA seq
772 aa
AA seq
DB search
MSLFNKVTKSFQWGDKTVVMETGEIARQASGAVVVDIDGTVILATVVASKTAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTL
SLNPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLV
VAGTEAAVLMVESEAQQLSEEIMLGGVVFGHEQANIAINAIHELVRDAGKPVWDWQAPAE
DEAFVAKVKSLAEEKLRAVYQIRSKQARTQALREANASVMNTLKESGEPFDAGKVNDLLF
AIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQGLVVTTLGT
ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEVSQFAPRLTTLKINPEKIRDVIGKGGAVIRGLQEETGTTINIDEDGTITIA
STDPEKAEFAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERPAGMEYSERPPREDRGDRGDRGG
ERRERSDRGDRGGDRGERAPRFNSEQQQQPRSNEQQPAPVGEQPYAPRDSQE
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcaacaaagtcaccaagtccttccaatggggcgacaagaccgtcgtcatg
gaaaccggtgaaatcgcccgccaggccagcggcgccgtggtggtcgacatcgacggcacc
gtgatcctcgcgaccgtggtcgcctccaagaccgccaagccgggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgcgggcaagatccccggcagcttcttc
aagcgcgaagccaagcccagcgaacacgaaaccctgaccagccgcctgatcgaccgcccg
atccgcccgctgttccccgagggcttcctgaacgaagtgcatgtggtcatccacacgctg
tcgctcaaccccgaagtcgacgccgacatcgccgccatgatcggcgtgagcgccgcgctg
tcgatctccggcattccgttcagcggcccgatcggtgctgcccgcgtgggctacatcaac
ggccagtacgtgctgaatccgggccagaccgcccgcaaggattcgcagatggacctcgtc
gtggccggcaccgaagccgccgtgctgatggtcgagtccgaagcacagcaactcagcgaa
gaaatcatgctgggcggcgtggtgttcggccatgagcaggccaacatcgcgatcaacgcg
atccatgaactcgtgcgcgacgccggcaagccggtgtgggactggcaagcgccggccgaa
gacgaagccttcgtcgccaaggtcaagagcctggccgaggaaaagctgcgcgccgtctac
cagatccgcagcaagcaagcccgcacgcaagccctgcgcgaagccaatgccagcgtgatg
aacacgctgaaggaaagcggcgagcccttcgacgccggcaaggtcaacgacctgctgttc
gctatcgaatcgaagatcgtccgcagccagatcctgtcgggcgaaccgcgcatcgatggc
cgcgacacgcgcaccgtgcgtcccatcgagatccgcaattccgtgctgccgcgcacccac
ggctcggcgctgttcacgcgcggcgagacgcagggcctggtcgtcaccacgctcggcacc
gaacgcgacgcgcagcgcatcgacgcgctggccggcgagtacgaagaccgcttcctgttc
cactacaacatgcctccctttgccaccggcgaagtgggccgcatgggctcgaccaagcgc
cgcgaaatcggccacggccgcctggccaagcgcgcgctcgtcgccgtgctgccgaccaag
gaagagttcccctataccatccgcgtggtgtctgaaatcaccgaatccaacggctcctcg
tcgatggcctcggtgtgcggcggctgcctctcgatgatggacgccggcgtgccgatgaag
gcccacgtggccggcatcgccatgggcctcatcaaggaagacaaccgctttgcggtgctg
accgacatcctgggcgacgaagatcacctgggcgacatggacttcaaggtggccggcacg
accaacggcatcaccgcactgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgcactggcccaggccaaggaagcgcgcatgcacatcctcggcaagatgcag
gaagccatgggcgaggccaagaccgaggtgtcgcagttcgcaccgcgcctgaccacgctg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggtggcgcggtcatccgcggc
ctgcaggaagaaaccggcacgacgatcaacatcgacgaagacggcaccatcaccatcgcc
tcgaccgaccctgaaaaggccgagttcgccaagaagcgcatcgagcagatcacggccgaa
gtcgaaatcggcaaggtctacgaaggcccggtcaccaagatcctggacttcggcgcgctc
atcaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcgcacgagcgc
gtcgagaaggtgaccgactacctgagcgaaggccagatcgtcaaggtcaaggtgctcgag
accgacgaaaagggccgcgtcaagctgtccatgaaggccctgaccgagcgtccggccggt
atggaatacagcgagcgtccgccgcgcgaagaccgtggcgaccgcggtgaccgtggcggc
gagcgccgcgagcgttcggaccgcggcgaccgtggtggcgatcgcggcgaacgcgctccg
cgtttcaacagcgagcagcaacagcagccgcgcagcaacgagcagcagccggcacccgtc
ggcgagcagccgtacgcaccgcgcgattcgcaagagtaa
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