Variovorax paradoxus S110: Vapar_3726
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Entry
Vapar_3726 CDS
T00916
Name
(GenBank) transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Vapar_3726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vap03000
]
Vapar_3726
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_3726
Enzymes [BR:
vap01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Vapar_3726
Transcription factors [BR:
vap03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Vapar_3726
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Vapar_3726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ACS20342
UniProt:
C5CUC9
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All DBs
Position
1:3924992..3926596
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AA seq
534 aa
AA seq
DB search
MPTSHASTDALESDACYLAMKTHDARFDGSFFTAVTSTGIYCRPVCRVKLPRRENCRFFR
HAAQAEAEGFRPCLRCRPELAPRAASWSTEDASRILALQAARLIDEPDAWSEEGPGAAQI
AARLGVSDRHLRRIFEAQFGVSPLQYLQTRRLLAAKQLIADTRLPMTQVALASGFASVRR
FNAAFLEHYGLNPSALRRAGGGEGGEGKAIEVRLGFRPPYDVGAMLGFFARRALRGVELA
STADGKEPAKGSTPTFVRLARTLRVQQGGQAHAGWLQLRFDMEREQMLLSVSDSLAAVLP
IVISRARAMLDLDAEPMAINAALHEAFPHGDGLRVPGTVDGFELAVRAVLGQQVTVAAAR
TLGSRLVEAFGEPIATPIEGLNRLFPTPAALAAASGDALGKLGIVRQRQAALQAIAREVA
GGRLALHAGADVPSTIAALQELPGIGAWTAQYIAMRALRWPDAFPAGDVALQKALGVSTE
RAASQASQAWRPWRSYAVLRAWHAPAPSSPAAATAAPSAAAAPFNNLTTAGASA
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgcctacctcacatgcatccaccgacgcactcgagagcgacgcctgctacctggcgatg
aagacgcacgatgcgcgcttcgacggctccttcttcaccgcggtgacctccaccggcatc
tactgccggccggtctgccgcgtgaagctgccgcggcgcgagaactgccgcttcttccgc
cacgcggcgcaggccgaggccgagggcttccgcccctgcctgcgctgccggcccgagctc
gcgccgcgggcggcgagctggtcgaccgaagatgcctcgcgcatcctcgcgctgcaggcc
gcgcggctcattgacgagcccgatgcctggtccgaggagggtccgggcgccgcgcagatc
gccgcgcggctcggcgtgagcgaccgccacctgcggcgcatcttcgaggcgcagttcggc
gtctcgccgctgcaatacctgcagacgcgccgcctgctggccgccaagcaattgatcgcc
gacacgcgcctgccgatgacgcaggtggcgctggccagcggcttcgcgagcgtgcgccgc
ttcaacgccgcgttcctggagcactacggcctcaacccgagcgcgctgcggcgtgccggc
ggcggcgagggcggcgagggcaaggccatcgaggtgcggctgggctttcgaccgccctac
gacgtgggcgcgatgctcggcttctttgcccggcgcgcgctgcgcggggtcgagctggcc
agcacggccgacggcaaggagccggccaagggcagcacgcccaccttcgttcggctggcc
cgcacgctgcgcgtgcagcagggcggacaggcacacgccggctggctgcagctgcgcttc
gacatggagcgcgagcagatgctgctgtcggtcagcgactcgctcgccgcggtgctgccg
atcgtgatcagccgcgcacgcgccatgctcgacctcgatgccgagccgatggccatcaac
gccgcgctgcacgaggcctttccgcatggcgacggcttgcgcgtgcccggcacggtcgat
ggcttcgagctcgcggtacgcgcggtgctgggccagcaggtcaccgtggccgccgcacgc
acgctgggctcgcggctggtggaggctttcggtgagcccatcgccacgccgatcgaaggc
ctgaatcgcctgtttccgacgcccgcggcactggcggccgcgagcggcgatgcactcggc
aagctcggcatcgtgcgccagcgccaggccgcgctgcaggccatcgcacgcgaggtcgct
ggcggcaggctcgcgctgcatgcgggcgccgacgtgccttcgaccattgccgcgctgcag
gagctgcccggcatcggcgcctggaccgcgcagtacatcgcgatgcgtgcgctgcgctgg
cccgacgcctttcccgcgggcgacgtggcgctgcagaaggcactgggcgtgagcaccgag
cgcgcggccagccaggcgtcgcaggcctggcggccctggcgcagctatgcggtgctgcgc
gcctggcatgcgccggcgccctcctctcccgctgccgccactgcagccccgtcggcggcg
gcagcgcctttcaacaacctcactacggcaggcgcctccgcctga
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