Variovorax paradoxus S110: Vapar_4133
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Entry
Vapar_4133 CDS
T00916
Name
(GenBank) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
KO
K00058
D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:
1.1.1.95
1.1.1.399
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00260
Glycine, serine and threonine metabolism
vap00270
Cysteine and methionine metabolism
vap00680
Methane metabolism
vap01100
Metabolic pathways
vap01110
Biosynthesis of secondary metabolites
vap01120
Microbial metabolism in diverse environments
vap01200
Carbon metabolism
vap01230
Biosynthesis of amino acids
Module
vap_M00020
Serine biosynthesis, glycerate-3P => serine
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
Vapar_4133
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Vapar_4133
00270 Cysteine and methionine metabolism
Vapar_4133
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vap04147
]
Vapar_4133
Enzymes [BR:
vap01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.95 phosphoglycerate dehydrogenase
Vapar_4133
1.1.1.399 2-oxoglutarate reductase
Vapar_4133
Exosome [BR:
vap04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
Vapar_4133
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2-Hacid_dh_C
2-Hacid_dh
ACT_AHAS_ss
NAD_binding_2
ACT
KARI_N
AlaDh_PNT_C
ACT_4
AdoHcyase_NAD
RS_preATP-grasp-like
PilM_2
Rossmann-like
Motif
Other DBs
NCBI-ProteinID:
ACS20746
UniProt:
C5CWY9
LinkDB
All DBs
Position
1:complement(4373607..4374839)
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AA seq
410 aa
AA seq
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MSSKTSLEKSRIKFLLLEGIHPSAVEVLRAAGYTNIESLPGALPDAELKAKIADVHFLGI
RSRTQLTAEVFAAAHKLVAAGCFCIGTNQVDLEAAREHGVAVFNAPYSNTRSVAELVLAE
AILLLRGVPEKSAVAHRGGWLKSAENAFEIRGKTLGIVGYGSIGAQLSVLAEALGMKVAF
YDVVTKLPLGNAHQVRELHQLLAQSDIVTLHVPETQATQWMIDTAEIAAMKPGAILINAS
RGTVVRIEPLAEALKQKKLLGAAIDVFPVEPRSNKDEFQSPLRGLDNVILTPHIGGSTME
AQANIGLEVAEKLVKYSDNGTSTSSVNFPEVALPAHPGKHRLLHIHRNVPGVLSEINKIF
SDNNINISSQFLQTNEKIGYVVMDIDAAYSDLALEKLAKVNGTIRSRVLF
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaaaacctctctcgaaaaaagccggatcaagttccttctgctcgagggcatc
catccttcggcggtggaggtcctgcgcgccgcgggctacaccaacatcgagtcgctgccg
ggtgcgttgcccgatgcggagctcaaggccaagatcgccgacgtccacttcctgggcatc
cgctcgcgcacgcagctcacggccgaggtcttcgcggccgcccacaagctggtggcggcg
gggtgcttctgcatcggcaccaaccaggtcgacctggaggccgcgcgcgagcacggcgtg
gcggtgttcaacgccccgtattccaacacccgctcggtagccgagctggtgctggccgaa
gccatcctgctgttgcgcggcgtgcccgagaagagcgcggtcgcgcaccgcggcggctgg
ctcaagtcggccgagaacgccttcgagatccgcggcaagacgctgggcatcgtgggctac
ggctccatcggcgcccagctctcggtgctggccgaggcgctgggcatgaaggtggcgttc
tacgatgtggtgaccaagctgcccctgggcaatgcgcaccaggtgcgcgaactgcaccag
ttgctggcccagagcgacatcgtgaccctgcacgtgcccgagacgcaggccacccaatgg
atgatcgatacggccgaaatcgccgccatgaagccgggcgcgatcctgatcaacgcctcg
cgcggcacggtcgtgcggatcgagccgctggccgaggcgctgaagcagaagaagctgctg
ggcgccgcgatcgacgtgttcccggtcgagccgcgcagcaacaaggacgagttccaatcg
cccttgcgcgggctggacaacgtgatcctcacgccccacatcggcggctcgacgatggag
gcgcaggccaacatcggcctggaggtggcggaaaagctggtgaagtacagcgacaacggc
acctcgacctcgtcggtcaactttcccgaggtggcgctgccggcccaccccggcaagcac
cggctgctgcacatccaccgcaacgtgcccggcgtgctgtcggagatcaacaagatcttc
tcggacaacaacatcaacatctcctcgcagttcctgcagaccaacgagaagatcggctac
gtggtgatggacatcgacgccgcgtattccgacctggcgctggaaaagctggccaaggtg
aacggcacgatccgcagccgcgtgctgttctga
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