Variovorax paradoxus S110: Vapar_4421
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Entry
Vapar_4421 CDS
T00916
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vap03016
]
Vapar_4421
Enzymes [BR:
vap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Vapar_4421
Transfer RNA biogenesis [BR:
vap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Vapar_4421
Prokaryotic type
tRNA splicing ligases
Vapar_4421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ACS21032
UniProt:
C5CJY1
LinkDB
All DBs
Position
1:complement(4660796..4662019)
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AA seq
407 aa
AA seq
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MEQNYKLHEVANGVPVKMWTNGVPVENEAQKQLENAARLPIVFKHIAAMPDVHYGIGATV
GSVIPTFKAIIPAAVGVDIGCGMMACKTTLNARDLPDNLGPLRSAIEKAVPHGSNPKRMG
RDKGSWETPPDETDAAWAQLVDEFDLICEDYPRIRNTNNHKHLGTLGTGNHFIEVCLDEA
GAVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDQDLAYFEEGAQYFGDYVRAVG
WAQKFARANREVMMQRVVAAARKVIAKPFEAHVEAVNCHHNYVSRETHFGEEVLVTRKGA
VSAKAGELGIIPGSMGAKSYIVRGKGNPESFMSCSHGAGRKMSRTKAKKLFTIADQIAAT
EGVECRKDADVIDEIPMAYKDIDAVMEAQKDLVEVVYTLKQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaactacaaactgcacgaagtcgccaacggcgtccccgtgaagatgtggacg
aacggcgtgcccgtggaaaacgaggcgcagaagcagctcgagaacgcggcgcgcctgccc
atcgtgttcaagcacatcgcggccatgccggacgtgcactacggcatcggcgccaccgtg
ggctcggtgatcccgaccttcaaggccatcatcccggccgcagtgggcgtggacatcggc
tgcggaatgatggcgtgcaagaccacgctcaacgcgcgcgacctgcccgacaacctgggt
ccgctgcgctcggccatcgaaaaggccgtgccgcacggaagcaaccccaagcgcatgggc
cgcgacaaggggtcgtgggaaacgccgcccgacgaaaccgacgccgcctgggcccagctg
gtggatgagttcgacctgatctgcgaggactacccgcgcatcaggaacacgaacaaccac
aagcacctgggaacgctgggtaccggcaaccacttcatcgaggtgtgcctcgacgaagcg
ggcgccgtgtggttcatgctgcattcgggttcgcgtggcgtgggcaatgccatcggtacg
cacttcatcgagcttgcgaagaaggacgccgaactgcaccagcgcaacctgcccgaccag
gacctggcgtacttcgaggaaggcgcccagtacttcggcgactatgtgcgcgcggtgggc
tgggcccagaagttcgcgcgcgccaaccgcgaggtgatgatgcagcgcgtggtcgcggct
gcgcgcaaggtgattgccaagcctttcgaggcgcatgtggaagcggtgaactgccaccac
aactacgtgagccgcgagacgcacttcggcgaagaggtgctcgtcacgcgcaagggcgcg
gtgagcgccaaggccggcgagctcgggatcattcccggcagcatgggcgccaagagctat
atcgtgcgcggcaagggcaaccccgagagcttcatgagctgcagccatggcgccggtcga
aagatgagccgcaccaaggcgaagaagctcttcaccatcgccgaccagatcgccgcgacc
gaaggcgtggaatgccgcaaggacgccgacgtgatcgacgagatcccgatggcctacaag
gacatcgacgcggtgatggaggcgcagaaggacctggtggaggtggtctacacgctcaag
caggtggtgtgcgtgaagggataa
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