Variovorax paradoxus S110: Vapar_4567
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Entry
Vapar_4567 CDS
T00916
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Vapar_4567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_4567
Enzymes [BR:
vap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Vapar_4567
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Vapar_4567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
Helicase_RecD
AAA_22
PhoH
UvrD-helicase
SLFN-g3_helicase
DEAD
AAA_5
AAA_28
nSTAND3
Mg_chelatase
AAA_16
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ACS21173
UniProt:
C5CL22
LinkDB
All DBs
Position
1:complement(4818231..4820357)
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AA seq
708 aa
AA seq
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MSATLSSLATVDAPVADRMPISSRPLLTMMASWREQGWLRRLDTAFARFLVDLSPTAPDA
LVLAAALVVHMEGRGHSCLRLDELLRDPQAVLGWPPEPAAALRVALDSLPGDVDIWIATF
QTSPLVGSDDGASRSTTIDAHPPLMLRGHTLYLRRYWEDERRVAAQVDARSRSELPVDPV
TVRMWLDRLFPADTHASPDSEAAIDWQKAACAVALRSKLSILTGGPGTGKTYTAARLLAL
LYAVDPAPERLRIALAAPTGKAAARLKQAIETSLTELQDRLGDSLSLGALAAHIGAARTL
HALLGARPDTRAFGFDAAHPLDVDVVIVDEASMIHLEMMAALLEALPTQARVILLGDKDQ
LASVEAGAVLGDLCRHAEHGLYRLSTAAYVEAASGQHIPAAYMGDGPPLAQQTVMLRASK
RFGGAIGQLALAANRGDSAAAEALLRDDSSPAVAWLDGGSASTAVRLALQGRDAAGEAGG
VDDAVGAYGGYGVYLTALQARPRGDEAPAHAGWTLAVLRAFERFRVLCAVREGEWGAMGL
NQAIERALVAEGRLTKAGEWYEGRPVIVTRNDAGLGVFNGDIGITLKPAAKGAPLRAYFL
DGESVRSVAVSRLAHVETAFAMTVHKSQGSEFAHTALVLPREPSRVLTRELVYTGITRAR
DAFTLVTGRTASLADALAHPTHRASGLLERLAPAEGSPPRAPERQRSL
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccactctgtcttccctggcaacggtggacgcccccgttgccgatcgaatgccc
atctcctcgcgaccgctgctgacgatgatggcgtcgtggcgagagcaggggtggctgcgg
cggcttgacaccgctttcgctcgtttcctggtagacctgtcgccgaccgctccggacgcg
ctggtcttggccgccgccttggtggtgcatatggaagggcgtgggcactcttgcctccgg
ctggacgagctattgcgtgatccccaggcggtgctgggttggcctcccgagccagctgcg
gccttgcgtgtagcgctggattccctgccgggcgatgtcgatatctggatcgcgactttt
cagaccagtccgctggtcgggtctgatgacggcgcatcgaggtcgacaaccattgacgcc
catccgccgctgatgctgcgtgggcacacgctgtacctgcggcgctactgggaggatgag
agacgcgtggccgcgcaggtcgacgcacgcagccggtccgaactgccggtggatcccgtg
acggtgcgcatgtggttggaccgattgttccccgctgacacccatgcatcgccagatagc
gaggccgccatcgattggcagaaagcagcctgcgccgtcgcgctgcgaagcaagctgtcg
atcctgaccggcggtccgggcactggtaagacctatacggccgctcgcctgctggcgctg
ctatacgcagtggatccagctccggagcggttgcgcatcgcgttggccgcgccgaccggc
aaggcggctgcgcggctcaagcaggcgattgagacctcgttgaccgaactgcaggatcgc
ttgggagacagcttgtcgctgggggcactggccgcgcacattggcgcagctcggacgttg
catgcgttgctcggggcacggccggatacccgcgcgtttggcttcgacgcggcgcacccg
ctagacgtcgacgtggtgattgtggatgaggcgtccatgatccacctggagatgatggcc
gcgctattggaggcattgccgacacaagcgcgggtgattctcctgggggacaaggaccaa
ctggcatcggtggaggcgggggcggtgctgggtgacctgtgccgccatgcggagcatggg
ctctaccggctttccaccgcagcttatgtggaagctgcctccggccagcacatccctgca
gcatatatgggggacggtccgccgttggcgcagcaaacggtcatgctgcgtgccagcaag
cgcttcggcggggcgattggccaactcgcgctggccgccaatcggggtgactcggcggct
gcggaagctctgctgcgcgacgacagtagtccggcggtggcctggctcgatggtggatcc
gcttcgaccgcagtgcgccttgcgctgcaagggcgcgacgctgccggagaggctggcggt
gttgatgatgccgttggagcatatggcggctatggtgtttacttaacagcgttgcaggca
cgaccacgcggcgacgaggcgcctgcacacgctggatggacgctcgcggtcttgcgtgcg
tttgagcgtttccgggtgctctgtgcggtgcgcgaaggtgaatggggggccatgggcctg
aaccaggcgatagaacgggcgctggtagcggaggggcgattgacgaaggccggcgaatgg
tacgaaggacgccccgtcatcgtcactcgcaatgacgcgggcctcggcgtattcaatggt
gatattggcatcacgctgaagccggcggccaagggcgcccccctgcgcgcttacttcctc
gacggcgagtccgtacgctcggtggctgtgagccggctggcgcacgtcgaaacggccttc
gccatgaccgtgcacaagtctcagggctcggagttcgcgcacacagcgctggtgctgccg
cgcgagcccagccgggtgttgacgcgcgagctggtctataccggcatcacgcgggcgcgg
gatgctttcactctcgtgacagggcgtacagcatcgctggcggatgcgctggcgcacccg
acccaccgcgcgagcggtttgcttgagcggcttgctcccgctgaaggcagcccaccacgt
gctcctgaaaggcaaaggtcgctttga
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