Variovorax paradoxus S110: Vapar_4601
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Entry
Vapar_4601 CDS
T00916
Name
(GenBank) type I secretion system ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vap
Variovorax paradoxus S110
Pathway
vap02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Vapar_4601
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vap02000
]
Vapar_4601
02044 Secretion system [BR:
vap02044
]
Vapar_4601
Transporters [BR:
vap02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
Vapar_4601
Secretion system [BR:
vap02044
]
Type I secretion system
Adhesin protein transporter
Vapar_4601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
AAA_29
AAA_18
AAA_22
AAA_28
MeaB
AAA_30
MMR_HSR1
RsgA_GTPase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ACS21206
UniProt:
C5CL55
LinkDB
All DBs
Position
1:complement(4879496..4881688)
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AA seq
730 aa
AA seq
DB search
MTATTMPELSAARGPELLAGWVDAVLAVAAHYHLDTSRERIRGAAAWSGHEDIGERVRQM
ARQAGLTVRHVAPRLETLSPWRLPVVLQLRDGQVAVVTAISAQGLRVMLGGDQGAETVCT
IDELQPALEAMAVLRPAQSAPDSRVDAYIRPVEPHWLRQIVLADWRPYAHILVASLAYNL
MALAGTLFSMQVYDRVVPAQSLPTLHVLFGGVLLSIAFSWVMRGARMRITDVVGKRADLR
ISDRVFGHALRVRGSARPRATGTFISQLRELEPVREMLTSTTVAAVADLPFFFVFCVLFW
FIAGWLVLVPLAACVLLLVPSLLAQPRLRALAQAGMRESSLRNAMLVEAVQGIDDIKVLQ
AEPRFQNQWNHYNAVNADSGLQLRALLNTLSNWSQTVQGGAFAFVVFFGAPLVMDGQMST
GVLVAASILSTRMLAPLAGVTQVLNRWQQAKVAGESLDQLMKLPVDHPPHETRVHRPAVQ
GDYTLRDAVFSHDGQTTALHVKALHIGPGERIAVLGCNGAGKSTLLQALSGLIEPRAGSV
VLDGVSMAHIDPADVRRDVGLLAQDARLFHGTLRENLQMGTPHATDAELITALQATGAWA
FVRRLPTGLDHPLLEGGRGLSGGQRQSLLLARLMLRRPSVLLLDEPTASLDEVAEREVIE
QLRALSAGRTLVLATHRPAMLDAVDRILVVDGGAVVLDGPRDQVMARLRQGAAASRETTA
LAGRGKEAQA
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaccacgatgcccgagctttctgccgcgcgcggccccgagctgctcgccggc
tgggtcgacgccgtgctggccgtggccgcccactaccacctggacacctcgcgcgagcgc
atccgcggcgctgccgcgtggagcggccacgaagacatcggcgagcgcgtgcgccagatg
gcccggcaggccgggctcaccgtgcgccacgtggcgccgcgcctggagaccctgagcccc
tggcggctgcccgtggtgctgcagctgcgcgacggacaggtggccgtggtcaccgccatc
tcggcgcagggcctgcgcgtgatgctcggtggcgaccagggcgcggaaaccgtctgcacg
atcgacgagctgcagcccgcgctcgaagccatggccgtgctgcggcccgcgcagtccgca
cccgactcgcgcgtcgatgcctacatccgtcccgtcgagccgcactggctgcgacagatc
gtgctggcggactggcggccctacgcccacatccttgtcgcatcgctcgcctataacctg
atggcgctggccggcacgctgttctcgatgcaggtgtacgaccgcgtcgtgcccgcgcag
tcgctgcccacgctgcatgtgctgttcggcggcgtgctgctgtcgattgcgttcagctgg
gtcatgcgcggcgcgcgcatgcgcatcaccgacgtggtgggcaagcgcgccgacctgcgc
atttcggaccgcgtgttcggccacgcgctgcgcgtgcgcggctcggcgcgcccgcgcgcc
accggcaccttcatctcgcagctgcgcgagttggagcccgtgcgcgaaatgctcacgtcg
accaccgtggcggcggtggccgacctgccgttcttcttcgtgttctgcgtgctcttctgg
ttcattgccggctggctcgtgctcgtgccgctggccgcgtgcgtgctgctgctcgtgccc
agcctgctggcgcagccgcgcctgcgcgcgctggcccaggcgggcatgcgcgaatcgtcg
ctgcgcaacgccatgctggtcgaggccgtgcagggcatcgacgacatcaaggtgctgcaa
gccgagccgcgcttccagaaccagtggaaccactacaacgccgtcaacgccgactcgggc
ctgcaactgcgcgcgctgctcaacaccctgagcaactggtcgcagaccgtgcagggcggc
gcctttgccttcgtcgtgttcttcggtgcgccgctggtgatggacgggcagatgagcacc
ggcgtgctcgtggccgcatcgattttgtcgacccgcatgctcgcgccgctggccggcgtg
acgcaggtgctcaaccgctggcagcaggccaaggtggccggcgaatcgctcgaccagctc
atgaagctcccggtcgaccacccgccccatgagacgcgcgtgcaccggcccgccgtgcag
ggcgactacacgctgcgcgacgccgtcttcagccacgacggccagaccaccgcgctgcac
gtgaaggcgctgcacatcggccctggcgagcgcattgccgttctcgggtgcaacggtgcg
ggcaagtcgacgctgctgcaggcgctgtcgggtctcatcgaaccgcgcgcgggcagcgtg
gtgctcgacggcgtgtcgatggcccacatcgaccccgccgacgtgcgccgcgacgtcggc
ctgctcgcgcaagacgcgcgcctgtttcacggcaccctgcgcgagaacctgcagatgggc
acgccccatgccaccgatgccgaactgatcaccgccctgcaagccaccggcgcctgggcc
ttcgtgcgccgcctgcccaccgggctggaccatccgctgctggaaggcgggcgcggcctc
tcgggcgggcagcgccagagcctgctgctcgcgcggctcatgctgcgccgccccagcgtg
ctgctgctcgacgagcccaccgcctcgctcgacgaagtggccgagcgcgaagtgatcgaa
caactgcgcgctctgtccgcaggccgcacgctggtgctcgccacgcaccgcccggccatg
ctcgatgcagtggaccgcatcctcgtggtggacggcggcgccgtcgtgctcgacgggccg
cgcgaccaggtgatggcgcggctgcgccagggcgcggccgcatcgcgcgagacaacggcc
ctcgcgggccgtggcaaggaggcacaggcatga
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