Variovorax paradoxus S110: Vapar_4603
Help
Entry
Vapar_4603 CDS
T00916
Name
(GenBank) outer membrane adhesin like proteiin
KO
K20276
large repetitive protein
Organism
vap
Variovorax paradoxus S110
Pathway
vap02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Vapar_4603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_4
Cadherin_5
Cadherin
Big_11
VWA_2
VWA
Big_6
VWA_CoxE
Herpes_capsid
Motif
Other DBs
NCBI-ProteinID:
ACS21208
UniProt:
C5CL57
LinkDB
All DBs
Position
1:complement(4883092..4888695)
Genome browser
AA seq
1867 aa
AA seq
DB search
MEAVYKSGGASRKAAADTPLVLDRPSIVSLKIAPESVLKFERRGGDLVLVLQGGQEVAVR
GFFAEYPDGGRNDLVLEDGAGVQWWGQYTAPWKDFHFTEIEWTDAGAALLPDGVPGWLLG
ALGVLGVGAAASGGGGGGGGGGPAFIPPLLPPQNRGPEGKAEPVVTGQDKPVAGQVQAAD
PDRDTLNFTVAKGPEHGTVTVDPSTGQFLYTPNPGYEGSDSFEVTVSDGRGGTTTVKVPV
TVSPVNDAPTAPDYTETTNEDTPVSGRVTGSDMDSGDTLTYARGSDPSHGTVTVNPDGTY
TYTPNPDFNGTDSFTVTVSDGHGGTTTSTVTVTINPVNDAPVFVDGGGTPVNTTDGYVFG
YDENRPAGTVLGTVHATDVDSATVTYSILSGNDNGYFAIDPVTGEISLTPAGAAAFANDY
EAGANAHALVVGANDGTVTTSIPVTLNEQNLNEAPTAPDDTKTTNEDTPVSGQIIGSDAD
GDTLTYVKGSDPAHGTVTVNADGTYTYTPGANFNGTDSFTVTVSDGHGGTTTSTVNVTVN
PVNDLPTVPDYIQTTHEDTPVSGQVIGTDVDGDTLSYVKGSDPAHGTVTVNADGTYTYVP
GVNFNGTDSFTVTVSDGHGGTTTSTVTVTINPVNDAPVFVDGGGTPVNTTDGYVFGYDEN
RPAGAVLGTVHATDVDSATVTYSILSGNDNGYFAIDPVTGAISLTAAGAAAFVNDYEAGA
NAHALVVGANDGTVTTNIPVTLNEQNINDAPKAPDYTKTTNEDTPVSGQVTGSDVDGDTL
TYVKGSDPAHGTVTVNADGTYTYVPGANFNGTDSFTVTVSDGHGGTTTSTVTVTINPVND
APVFVDGGGTPVNTTDGYVFGYDENRPAGAVLGTVHATDGDSATVTYSILSGNDNGYFAI
DPVTGEISLTPAGAAAFANDYEAGANAHALVVGANDGTVTTSIPVTLNEQNLNEAPTAPD
DTKTTNEDTPVSGQIIGSDADGDTLTYVKGSDPAHGTVTVNADGTYTYVPGVNFNGTDSF
TVTVSDGHGGTTTSTVTVTINPVNDAPVFVDGGGTPVNTTDGYVFGYDENRPAGAVLGTV
HATDVDSATVTYSILSGNDNGYFAIDPVTGAISLTLAGAAAFVNDYEAGANAHALVVGAN
DGTVTTSIPVTLNEQNLNEAPTAPDYTKTTNEDTPVSGQIIGSDVDGDTLSYVKGSDPAH
GTVTVNADGTYTYVPGANFNGTDSFTVTVSDGHGGTTTSTVNVTVNPVNDAPSAMVNNAE
AVSEGSLPGGIPAAGEPPLQSTGTISIADPDSAAGDLSVSLSGPNGVTSGGQPVSWTWDA
GTHTLTGSVTVGGVTTEVMTVAVGNVSATGAGQFEAGYTVTLKAPIDHLPGNGEGVSNLH
FEAVVSDGQASGAPVGFEVPVKDDAPVLVNGEQAVDVAPIDTNLMVILDLSGSMGQETPT
RLSRAKEAIQNLIDGYDLYGDVRVQLVTFSTTGASQQAWMTAAEAKALVQNLQAAGSTNY
DAALAAAMNGFSATGKLDGAQNVSYFLTDGEPTLGDGNTAQLANSSNSSTADRGIQAGEE
AIWTNFLNTHQINSFALGLGSSLNAEAQAFIDPIAYNGNTGANTNGQIITDTSQLNDVLQ
GTISVPPTVSNLLTGGLGGSSGFGADGGHVSTLSIDGTTYAFDSSTGLMTKTGPAAGSDY
SYDAATHQVTIATAQGGKLVVDFDSGEFSYQVAPRTSGSHNYDETVSYQVVDRDGDASNA
ATQTLHVNYTPAAGAAAFFTSADSLGLAGVDAATVSLEQQQPHDAPHSPYGDSPWGGTQL
SDMLHAYNAAESLQVLLQAAFPPAFASTQASPTVLALASSADSLTAYAPPVAPSLDDELH
MGLAFHH
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgtttacaagtctggtggcgcatcccgcaaagcggcggcagacacccctctg
gttctggatcgcccatcgatcgtctcgctgaagatcgcgcccgagagcgtgctcaagttc
gagcgtcgcggcggcgacctcgtgctcgtgttgcagggcggccaggaagtcgccgtgcgc
ggcttcttcgccgagtaccctgacggcggccgcaacgacctcgtgctcgaagacggcgcc
ggcgtgcagtggtggggccagtacaccgcgccctggaaagactttcacttcaccgaaatc
gaatggaccgacgccggcgccgcgctactgcccgacggtgtgcccggctggctgctgggt
gcgctcggcgtgctgggcgtcggtgccgccgcgagcggtggtggtggtggcggcggcggt
ggcggcccggccttcatcccgccgctgctcccgccgcagaaccgcggccccgaaggcaag
gccgagcccgtcgtcaccgggcaggacaagcccgttgccgggcaagtgcaggccgccgac
ccggaccgcgacacgctgaacttcaccgtcgccaagggccccgagcacggcaccgtcacc
gtcgacccgtccaccggccagttcctctacacgcccaaccccggctacgaagggtccgac
agcttcgaagtgaccgtcagcgacggcaggggcggcaccaccaccgtgaaggtgcccgtg
accgtctcgcccgtcaacgacgcgcccacggcgcccgactacaccgagaccacgaacgaa
gacacgcccgtgagcggccgcgtgaccggcagcgacatggacagcggcgacacgctgacc
tacgcgaggggcagcgatccgtcgcatggcaccgtgacagtcaacccggacggcacgtac
acctacacgcccaacccggacttcaacggcacggacagcttcaccgtcacggtgagcgac
ggccacggtggcacgaccaccagcaccgtgaccgtgaccatcaaccccgtcaacgacgcc
cctgtgttcgtcgacggcggtggcaccccggtgaacacgacggacggctacgtcttcggc
tacgacgagaaccgtcctgcaggcaccgtgctcggcaccgtccacgctacggacgtcgac
agcgcgaccgtcacctacagcatcctctcgggcaacgacaacggctacttcgccatcgac
ccggtcacgggcgagatcagcctcacgccggcgggcgctgcggcgttcgcgaacgactac
gaggcgggcgccaacgcccacgcgctggtggtcggcgcgaacgacggcacggtcaccacg
tccatccccgtcacgctcaacgagcagaacctcaacgaagcgccgacggcgcccgacgac
accaagacgacgaacgaagacacgcccgtcagcggccagatcatcggaagcgatgctgat
ggcgacacgctgacctacgtgaagggcagcgacccggcccatggcacggtcacggtcaac
gccgacggcacgtacacctacacgcccggtgccaacttcaacggcaccgacagcttcacc
gtcacggtgagcgacggccatggcggcacgaccaccagcacggtgaacgtgaccgtcaac
ccggtgaacgatctgcccacggtcccggactacatccagaccacgcacgaagacacgccc
gtcagcggccaggtcatcggcaccgacgtcgatggcgacacgctgagctacgtgaagggc
agcgatccagcccacggcacggtcacggtcaacgccgatggcacctacacctacgtgccc
ggcgtcaacttcaacggcaccgacagcttcaccgtcacggtgagcgacggccacggcggc
acgaccaccagcaccgtgaccgtgacgatcaaccccgtcaacgacgcccccgtgttcgtc
gacggcggtggcaccccggtgaacacgacagacggctacgtcttcggctacgacgagaac
cgtcctgcaggcgccgtgctcggcacggtccacgccaccgacgtcgacagcgcgaccgtc
acctacagcatcctctcgggcaacgacaacggctacttcgccatcgacccggtcacgggc
gcgatcagcctcacggctgcaggcgctgcggcgttcgtgaacgactacgaagcgggcgcc
aacgcgcacgcgctggtggtcggcgcgaacgacggcacggtcacgacgaacatccccgtc
acgctcaatgagcagaacatcaacgacgcaccgaaggcgcccgactacaccaagaccacg
aacgaagacacgccagtcagcggccaagtgactggcagcgacgtcgacggcgacacgctg
acctacgtgaagggcagcgacccggcccatggcacggtgacagtcaatgccgatggcacc
tacacctacgtgcccggcgccaacttcaacggcaccgacagcttcaccgtcacggtgagc
gacggccacggtggcacgaccaccagcacggtgaccgtgacgatcaaccccgtcaacgac
gcccccgtgttcgtcgacggcggtggcaccccggtgaacacgacagacggctacgtcttc
ggctacgacgagaaccggcccgcaggcgccgtgctcggcacggtccacgccaccgacggc
gacagcgcgaccgtcacctacagcatcctctcgggcaacgacaacggctacttcgccatc
gacccggtcacgggcgagatcagcctcacgccggcgggcgctgcggcgttcgcgaacgac
tacgaggcgggcgccaacgcccacgcgctggtggtcggcgcgaacgacggcacggtcacc
acgtccatccccgtcacgctcaacgagcagaacctcaacgaagcgccgacggcgcccgac
gacaccaagacgacgaacgaagacacgcccgtcagcggccagatcatcggaagcgatgct
gatggcgacacgctgacctacgtgaagggcagcgatccagcccacggcacggtcacggtc
aacgccgatggcacctacacctacgtgcccggcgtcaacttcaacggcaccgacagcttc
accgtcacggtgagcgacggccacggcggcacgaccaccagcaccgtgaccgtgacgatc
aaccccgtcaacgacgcccccgtgttcgtcgacggcggtggcaccccggtgaacacgaca
gacggctacgtcttcggctacgacgagaaccgtcctgcaggcgccgtgctcggcacggtc
cacgccaccgacgtcgacagcgcgaccgtcacctacagcatcctctcgggcaacgacaac
ggctacttcgccatcgacccggtcacgggcgcgatcagcctcacgctggcgggcgctgcg
gcgttcgtgaacgactacgaggcaggcgccaacgcgcacgcgctggtggtcggcgcgaac
gacggcacggtcaccacgtccatccccgtcacgctcaacgagcagaacctcaacgaagca
ccgacggcgcccgactacaccaagaccacgaacgaagacacgcccgtcagcggccagatc
atcggaagtgacgtcgacggcgacacgctgagctacgtgaagggcagcgacccggcccat
ggcacggtgacggtcaacgctgatggcacctacacctacgttcccggtgccaacttcaac
ggcaccgacagcttcaccgtcacggtgagcgatggccacggtggcacgaccaccagcacg
gtgaacgtgaccgtcaacccggtgaacgacgcgccatcggccatggtgaacaacgcagaa
gccgtctccgaaggcagcctgcccggcggcattccagctgcgggagagccgccgctgcaa
tcgaccggcaccatttccatcgcggacccggacagcgcggccggcgacctgtcggtgtcg
ctgagtggccccaacggcgtcacctccggcggccagccggtgtcgtggacctgggacgcg
ggcacgcacacgctcacgggcagcgtcaccgtcggcggcgtcaccaccgaggtgatgacc
gtggcggtgggcaatgtcagcgccacgggcgcggggcagttcgaggcgggctacaccgtc
acgctgaaggcgccgatcgaccacctgccgggcaacggcgaaggcgtgtcgaacctgcac
ttcgaagccgtggtgagcgatggccaggccagcggcgcgccggtgggcttcgaggtgccc
gtcaaggacgatgcgccggtgctcgtgaacggcgagcaggccgtcgacgtggcgccgatc
gataccaacctcatggtgatcctggacctttccgggagcatgggccaggaaaccccgaca
cgcctcagccgtgcgaaagaggcgatccagaatctgatcgacggctacgacctgtacggc
gacgtgcgggtgcagctcgtcaccttcagcacgaccggggcctcgcagcaggcctggatg
acggcggccgaagccaaggcgctggtgcagaacctgcaggccgctggcagcaccaactac
gacgcggccctggctgcggcgatgaacggcttctcggccaccggcaagctggacggggcc
cagaacgtgtcctacttcctcacggacggcgagccgaccctgggcgacggcaatacggcg
cagttggcgaacagcagcaacagcagtacggccgacaggggcatccaggccggggaagaa
gcgatctggacgaacttcctcaacacccaccagatcaactcgttcgcactgggcctgggc
tcgagcctgaacgcggaggcacaggctttcatcgaccccatcgcctacaacggcaacacc
ggcgcgaacaccaatggccagatcatcaccgacacgagccagctgaacgacgtgctgcaa
ggcacgatcagcgtgccacccaccgtcagcaacctgctgaccggcggtctcggcggctcg
tcgggcttcggtgccgacggcggccatgtgtccacgctgagcatcgacggcaccacctac
gccttcgacagcagcaccggcctgatgacgaagaccggccccgccgccggcagcgactac
agctacgacgcggcgacgcaccaggtcaccattgccacggcgcagggcggcaagctggtc
gtggacttcgactcgggcgagttcagctaccaggtggcaccgcgcaccagcggctcgcac
aactacgacgagaccgtcagctaccaggtggtcgaccgcgacggcgatgcgagcaacgcg
gccacgcagacgctgcacgtcaactacacgcccgcagcgggggcggcagcgttcttcacc
tcggccgactcgctggggctggccggcgtcgacgcagcgacggtgtcgctcgagcagcag
caaccgcacgacgcgccgcattccccctacggcgacagcccgtggggcggcacgcagctg
tccgacatgctgcatgcctacaacgcggccgagtcgctgcaggtgctgctgcaagccgcg
ttcccgccggcctttgcgagcacgcaggcatcgcccacggtgctggccctggcgtcgtcg
gccgactcgctcacggcctacgcaccgcccgtggccccttcgctcgacgacgagcttcac
atgggcctcgcgtttcaccactga
DBGET
integrated database retrieval system
