Variovorax paradoxus S110: Vapar_4728
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Entry
Vapar_4728 CDS
T00916
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00730
Thiamine metabolism
vap01100
Metabolic pathways
vap01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Vapar_4728
Enzymes [BR:
vap01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
Vapar_4728
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ACS21333
UniProt:
C5CM74
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All DBs
Position
1:complement(5023807..5025693)
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AA seq
628 aa
AA seq
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MNAPDKFTSLLSLTREPFPASHKCLIPGSRPDLNVPVRDVLLTNGETVSLYDTSGPYTDA
KVEIDVRRGLPGVRGAWITERNDTESYEGRSHQALDEGLKHAHDHDAQRLAELRAGASAL
QRTPRRAKAGANVTQMHYARRGIVTPEMEYVALRENGKREWMAEYLANEERAKRVAGNPM
GASIPRIITPEFVRDEVARGRAIIPANINHPEVEPMAIGRNFKVKINANIGNSAVTSSIE
EEVEKLVWAIRWGADNVMDLSTGKNIHTTRDWIVRNSPVPIGTVPIYQALEKVGGVAEDL
TWEIFRDTLIEQAEQGIDYFTIHAGVRLPFIHLTADRMTGIVSRGGSIMAKWCIAHHKES
FLYERFEDICDIMKAYDVSFSLGDGLRPGSGADANDEAQFAELRTLGELTQIAWKHDVQT
MIEGPGHVPMHMIQANMDEQLKHCHEAPFYTLGPLTIDIAPGYDHISSAIGAAMIGWAGT
AMLCYVTPKEHLGLPDRDDVKQGIIAYKIAAHAADVAKGHPGARSRDDALSKARFEFRWQ
DQFNLGLDPDTAREFHDETLPKDSSKVAHFCSMCGPKFCSMKITQEVREYAAKKGVAEAE
AMAEGMAQKSREFMAGGGEIYIPIQPAS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcccccgacaagttcacctccctgctctcgctcacgcgcgagccctttcccgca
tcgcacaagtgcctgatcccgggcagccggcccgacctcaacgtgccggtgcgcgacgtg
ctgctgaccaacggcgagaccgtgtcgctctacgacacctcgggcccctacaccgatgcc
aaggtcgagatcgacgtgcgccgcggcctgcccggcgtgcgcggcgcctggatcaccgag
cgcaacgacaccgaaagctacgaaggccgctcgcaccaggcgctcgacgagggcctgaag
cacgcgcacgaccacgatgcccagcgcctggccgaactgcgggccggcgcctcggcgctg
cagcgcacgccgcgccgcgccaaggcgggcgccaacgtcacgcagatgcactacgcgcgc
cgcggcatcgtcacacccgagatggaatacgtggcgctgcgcgagaacggcaagcgcgag
tggatggccgaatacctcgccaacgaggagcgcgccaagcgcgtggccggcaacccgatg
ggcgccagcattccgcgcatcatcacgcccgagttcgtgcgcgacgaggtggcgcgcggc
cgcgccatcatcccggccaacatcaaccatcctgaagtggagccgatggccatcggccgc
aacttcaaggtcaagatcaacgccaacatcggcaactcggccgtcacctcgagcatcgag
gaagaagtggaaaagctcgtgtgggcgatccgctggggcgccgacaacgtgatggacctt
tccaccggcaagaacatccacaccacgcgcgactggatcgtgcgcaacagtcccgtgccc
atcggcaccgtgccgatctaccaggcgctcgagaaggtgggcggcgtggccgaggacctg
acctgggagatcttccgcgacacgctgatcgagcaggccgagcagggcatcgactacttc
accatccatgccggcgtgcggctgccgttcatccacctgacggccgaccgcatgacgggc
atcgtctcgcgcggcggctcgatcatggccaagtggtgcatcgcgcaccacaaggagagc
tttctctacgagcgcttcgaggacatctgcgacatcatgaaggcctacgacgtgagcttc
tcgctcggcgacggcctgcgcccgggctcgggcgccgacgccaacgacgaagcgcagttt
gccgagctgcgcacgctgggcgagctcacgcagatcgcatggaagcacgacgtgcagacc
atgatcgaggggcccggccacgtgccgatgcacatgatccaggccaacatggacgagcag
ctcaagcactgccacgaggcgccgttctacacgctcgggccgctgaccatcgacatcgcg
ccgggctacgaccatatctccagcgccatcggcgccgcgatgatcggctgggccggcacc
gcgatgctctgctacgtgacgcccaaggagcacctgggcctgcccgaccgcgacgacgtg
aagcaggggatcattgcctacaagatcgccgcgcatgcggccgacgtggccaaggggcac
cccggcgcgcgctcgcgcgacgatgcgctcagcaaggcgcgcttcgaattccgctggcag
gaccagttcaacctgggcctggaccccgacacggcgcgcgaattccatgacgagaccctg
cccaaggattcgagcaaggtggcgcatttctgctcgatgtgcggaccgaagttctgctcg
atgaagatcacgcaggaagtgcgcgagtacgcggcgaagaagggcgtggccgaggcggaa
gccatggccgaaggaatggcgcagaagtccagggagttcatggcgggcggcggcgagatc
tacatcccgatccagcccgcgtcctga
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