Variovorax paradoxus S110: Vapar_4936
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Entry
Vapar_4936 CDS
T00916
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00061
Fatty acid biosynthesis
vap00071
Fatty acid degradation
vap01100
Metabolic pathways
vap01212
Fatty acid metabolism
vap02024
Quorum sensing
vap04146
Peroxisome
Module
vap_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Vapar_4936
00071 Fatty acid degradation
Vapar_4936
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Vapar_4936
09145 Cellular community - prokaryotes
02024 Quorum sensing
Vapar_4936
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vap01004
]
Vapar_4936
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vap04147
]
Vapar_4936
Enzymes [BR:
vap01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Vapar_4936
Lipid biosynthesis proteins [BR:
vap01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Vapar_4936
Exosome [BR:
vap04147
]
Exosomal proteins
Exosomal proteins of breast milk
Vapar_4936
Exosomal proteins of breast cancer cells
Vapar_4936
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ACS21540
UniProt:
C5CP76
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All DBs
Position
1:complement(5243192..5245072)
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AA seq
626 aa
AA seq
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MSTTALRAPAGLWDLAHLQPSPGIAVPGDTIPAVFWKAVELRADKIWMRQKEFGIWRAWT
WRQTAEAVREIAGGLLALGFGPGECASILANTVIEWVLCDVAVLSCGGVSNGIYPTDAAS
QVHYLCEDSRTTLLFVEDDEQLDKALEVRAQLPMLRKIVVFDMEGLRELDDPGVISLDAL
RALGRDHLQAHPQALDERIAACRPEDLAILVYTSGTTGKPKGAMHSHRGLVYTMRGYNTL
LAQGEGDERMCFLPLCHIAERMGGEYFAMYTGSILNFVENPETVPENVREISPTVFTAVP
RVWEKFYSGVMIALKEASRLQQAAYGWSIGVGRQIAERVLEGRPVGAWLRLKFRLARWLA
LDNVRKLIGIHRARFLVTGAAPISPELVRWYLALGVPMLEVWGMTESCGASTGVPPSRIR
PGSIGPATSYNEVRLDPQTGEILVRGPNVFMGYLNLPEKTAETIDADGWLHTGDVGTADA
EGYFRITDRMKDIIITAGGKNITPSELENELKFSPYITDAVVIGDKKPYLTVIVMIDQEN
VEKFAQDHDVPFSNYESLTRAQEVLDLIQGEIDRVNAKFARVEQIKKFFLLETQLSAEDE
ELTPTMKLKRKLVQAKYAERIEAMYR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaccgccctgcgcgctccagcaggcctctgggacctcgcgcacctgcagccg
agcccgggcatcgccgtgccgggcgacaccatcccggccgtgttctggaaggccgtggag
ctgcgcgccgacaagatctggatgcggcagaaggaattcggcatctggcgcgcctggacc
tggcggcaaaccgccgaggccgtgcgcgagattgcgggcggcctgctggcgctcggcttc
gggccgggcgagtgcgcgtcgatcctcgccaacaccgtcatcgaatgggtgctgtgcgac
gtggccgtgctcagctgcggcggcgtgtccaacggcatctatcccaccgacgcggcctcg
caggtgcactacctctgcgaggattcgcgcaccaccttgctcttcgtggaggacgacgag
cagctcgacaaggcgctcgaggtgcgcgcgcaattgccgatgctgcgcaagatcgtcgtg
ttcgacatggaaggcctgcgcgaactcgacgaccccggcgtcatcagcctggacgccctg
cgcgcactcggccgcgaccacctgcaggcccatccgcaggcgctggacgagcgcattgcc
gcctgccgccccgaagatctcgcgatcctggtctacacctcgggcaccaccggcaagccc
aagggcgcgatgcacagccaccgcgggctggtctacaccatgcgcggctacaacaccctg
ctggcccagggcgagggcgacgagcgcatgtgcttcctgccgctgtgccacattgccgag
cgcatgggcggcgaatacttcgcgatgtacaccggctcgatcctcaacttcgtcgagaac
ccggagacggtgcccgagaacgtgcgcgagatttcgcccacggtgttcaccgccgtgccg
cgcgtgtgggagaagttctattcgggcgtgatgatcgcgctcaaggaagccagccgcctg
cagcaggctgcgtacggctggagcatcggcgtgggccggcagatcgccgagcgcgtgctc
gagggccggccggtgggcgcgtggctgcgcttgaagttccgcctggcgcgctggctggcg
ctggacaacgtgcgcaagctcatcggcatccaccgcgcgcgttttctcgtgaccggcgcg
gcgccgatctcgcccgagctcgtgcgctggtacctggcgctgggcgtgcccatgctggag
gtctggggcatgacggaatcgtgcggcgcctccaccggcgtgccgccgtcgcgcatccgg
ccgggctcgatcggcccggccaccagctacaacgaggtgcgcctcgatccgcagaccggc
gagatcctggtgcgcggccccaatgtcttcatggggtacctcaacctgcccgagaagacc
gccgagaccatcgacgccgacggctggctgcacaccggtgacgtgggaacggccgacgcg
gaagggtatttccgcatcaccgaccgcatgaaggacatcatcatcacggcaggggggaag
aacatcacgccgagcgagctggagaacgagctcaagttcagcccctacatcaccgacgca
gtggtgatcggcgacaagaaaccctacctcacggtgatcgtcatgatcgaccaggagaac
gtcgagaaatttgcgcaggaccacgacgtgccgttcagcaactacgaaagcctgacgcgc
gcgcaggaggtgctggacctgatccagggcgagatcgaccgcgtcaacgcgaagtttgcg
cgggtcgagcagatcaagaagttcttcctgctcgaaacgcagctctccgccgaggacgag
gagctcacgccgacgatgaagctcaagcgcaagctggtccaggccaagtacgccgagcgc
atcgaggccatgtaccgctga
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