Variovorax paradoxus S110: Vapar_5006
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Entry
Vapar_5006 CDS
T00916
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00061
Fatty acid biosynthesis
vap00071
Fatty acid degradation
vap01100
Metabolic pathways
vap01212
Fatty acid metabolism
vap02024
Quorum sensing
vap04146
Peroxisome
Module
vap_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Vapar_5006
00071 Fatty acid degradation
Vapar_5006
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Vapar_5006
09145 Cellular community - prokaryotes
02024 Quorum sensing
Vapar_5006
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vap01004
]
Vapar_5006
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vap04147
]
Vapar_5006
Enzymes [BR:
vap01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Vapar_5006
Lipid biosynthesis proteins [BR:
vap01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Vapar_5006
Exosome [BR:
vap04147
]
Exosomal proteins
Exosomal proteins of breast milk
Vapar_5006
Exosomal proteins of breast cancer cells
Vapar_5006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ACS21609
UniProt:
C5CQ37
LinkDB
All DBs
Position
1:5318449..5320404
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AA seq
651 aa
AA seq
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MQTTAPTFPRLLLAHAQAQPQAPAIREKDLGIWQTWSWSAVAQEVREMACGLASLGFKPF
DNLSIVGANRPHLYMAVLAAQSLRGVPVPLYQDAVASEMVFMLQDAAIDFVIVEDQEQVD
KLLECRELQKDQQHGIRHIIYDDPKGLRHYDQPGLMSYEQLRELGREFDKAHVGYYDRAV
ASGEATDVGVILYTSGTTGRPKGVCQTHASFIAAGRGGVETDRLGPGDNIMSYLPMAWVG
DHLFSVAQWLVGGFTLNCPESSETVMNDMREIGPSYYFGPPRTFEGLLTAVSIRMEDAAA
PKRWLYGKFMALAQRVGADILNGAPVGTGDRLMYGLGNLLVYGPLRNVLGMSRIRVAYTA
GAAIGPDLFRFYRSIGVNLKQFYGQTETCAYVCLQQDGKVKLQTVGTAAPGIELKIAEDG
EVLVRGVSVLKEYYKRPDATAEVLDANGYFHTGDAGVLDSEGHLRIIDRAKDVGRLASGA
IFAPNYIENKLKFFPQIKEAVCFGNAREEVCAAINIDFEAVGNWAERRGLAYGGYVDLAG
KPEVLALVAECIAKVNADLASEDGMGETQIARFLVLHKELDPDDDELTRTRKVRRGFIAE
KYAVLVSALYGGKSEQFIETQVKFEDGRTGVVSATLKITEAKTFPIVKAAA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaccaccgcccccacctttccccgtctgctgcttgcgcatgcgcaagcccagccc
caggcgcccgccatccgcgagaaggatctcggcatctggcaaacctggagctggagcgcc
gtggcgcaggaagtgcgcgaaatggcctgcggcctcgcgagcctgggcttcaagcccttc
gacaacctgtccatcgtgggcgccaaccgcccgcacctgtacatggcggtgctcgcagcg
cagagcctgcgcggcgtgccggtgccgctctaccaggacgcggtggccagcgagatggtc
ttcatgctgcaggacgcggccatcgacttcgtgatcgtggaggaccaggaacaggtcgac
aagctgctcgagtgccgcgagctgcagaaggaccagcagcacggcatccgccacatcatc
tacgacgaccccaagggcctgcgccactacgaccagcccgggctcatgagctacgagcag
ctgcgcgaactgggccgcgaattcgacaaggcccacgtcggctactacgaccgcgcggtg
gccagcggcgaagccaccgacgtcggcgtgatcctctacacctcgggcaccaccggccgg
cccaagggcgtgtgccagacgcatgcgagcttcatcgcggcgggccgcggcggcgtcgag
accgacaggctcggccccggcgacaacatcatgagctacctgccgatggcctgggtcggc
gaccacctgttctcggtggcgcagtggctggtgggcggcttcacgctcaattgccccgag
tcgtccgagacggtgatgaacgacatgcgcgagatcggcccgagctactacttcggcccg
ccgcgcaccttcgagggcctgctcacggccgtgtcgatccgcatggaagacgcggccgcg
cccaagcgctggctgtacggcaagttcatggcgctcgcgcagcgcgtgggcgccgacatc
ctcaatggcgcgccggtgggcacgggcgaccggctgatgtacggccttggcaacctgctg
gtctacgggccgctgcgcaacgtgctgggcatgagccgcatccgcgtggcctacacggcc
ggcgcggccatcgggccggacctgttccgcttctaccgctcgatcggcgtcaacctcaag
cagttctacggccagaccgagacctgcgcgtacgtgtgcctgcagcaggacggcaaggtc
aagctgcagaccgtgggcacggccgcgccgggcatcgaactgaagatcgccgaggacggc
gaagtgctggtgcgcggcgtctcggtgctcaaggaatactacaagcgccccgacgccacg
gccgaggtgctcgacgccaacggctacttccacaccggcgacgcgggcgtgctcgacagc
gagggccacctgcgcatcatcgaccgcgccaaggacgtgggccggctcgcgagcggcgcg
atctttgcgcccaactacatcgagaacaagctcaagttcttcccgcagatcaaggaagcc
gtgtgcttcggcaacgcacgcgaggaggtctgcgcggccatcaacatcgacttcgaggcg
gtgggcaactgggccgagcgccgggggctggcctatggcggctacgtcgacctggccggc
aagcccgaggtgctggcgctcgtcgccgaatgcatcgccaaggtgaatgccgacctggcg
agcgaagacggcatgggcgagacgcagatcgcgcgcttcctggtgctgcacaaggagctc
gaccccgatgacgacgagctcacgcgcacgcgcaaggtgcggcgcggcttcatcgccgag
aaatacgcggtgctggtcagcgcgctgtacggcggcaagagcgagcagttcatcgagacc
caggtcaagttcgaggacggacgcacgggggttgtcagcgccacgctgaagatcaccgaa
gccaagaccttccccatcgtgaaggccgctgcatga
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