Variovorax paradoxus S110: Vapar_5045
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Entry
Vapar_5045 CDS
T00916
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Vapar_5045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vap03021
]
Vapar_5045
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_5045
Enzymes [BR:
vap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Vapar_5045
Transcription machinery [BR:
vap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Vapar_5045
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Vapar_5045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ACS21647
UniProt:
C5CQ75
LinkDB
All DBs
Position
1:complement(5366394..5367383)
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AA seq
329 aa
AA seq
DB search
MQTTLLKPKTIQVEQLAANKAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAG
VLHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVLASDIQTPHDVEI
INPDHVIAHLSQGGKLDMQIKVEKGRGYVPGTMRRYADEPTKSIGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLLVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDA
PAPRSAQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSL
NEIKEVLASRGLTLGMKLESWPPAGLDKR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaccctgctgaaacccaagaccatccaggtcgagcaacttgccgccaacaag
gccaaggtcacgctcgagcctttcgagcgcggctacggccacacgctcggcaacgcgctg
cgccgcgtcctgctgtcgtcgatggtcggttattcggccactgaagtcacgatcgccggc
gtgctgcacgagtactcgtcgatcgacggcgtgcaggaagatgtcgtcaacatcctgctg
aatctcaagggcgtggtgttcaagctccacaaccgcgacgaagtcacgctgagcctgcgc
aaggacggcgaaggcccggtgctcgcgtcggacatccagaccccgcacgacgtcgagatc
atcaaccccgaccacgtgatcgcgcacctgtcgcaaggcggcaagctcgacatgcagatc
aaggtcgaaaagggccgcggctacgtgcccggcacgatgcgccgctatgccgacgagccg
accaagtcgatcggccgcatcgtcctggacgcctcgttctcgcccgtcaagcgcgtgagc
tacacggtcgaaagcgcccgtgtcgaacagcgcaccgacctggacaaactgctggtcgag
atcgaaaccaacggtgcgatcacggccgaagacgccgtgcgcgcctcggctaaaatcctg
gtcgagcagctggccgtgttcgcgcagctcgaaggcggcgaactggctgcattcgatgcg
ccggcaccgcgcagcgcacagcaattcgatccgatcctgctgcgccctgtcgacgagctc
gagctcaccgtgcgttcggccaactgcctgaaggccgaaaacatctactacatcggcgac
ctgatccagcgcaccgagaacgagctgctcaagaccccgaacctgggtcgcaagtcgctc
aacgaaatcaaggaagtgcttgcctcgcgcggcctgaccttgggtatgaagcttgaaagc
tggccgccggccggcctcgacaagcgttga
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