Variovorax paradoxus S110: Vapar_5212
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Entry
Vapar_5212 CDS
T00916
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vap03009
]
Vapar_5212
Enzymes [BR:
vap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Vapar_5212
Ribosome biogenesis [BR:
vap03009
]
Prokaryotic type
rRNA helicases
Vapar_5212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ACS21814
UniProt:
C5CRD8
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All DBs
Position
1:5534031..5535461
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AA seq
476 aa
AA seq
DB search
MTTSPSTAGGPPAGNGFATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLIAQAK
TGSGKTAAFALALLSNLNPRRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCG
GVALRGQIASLEHGAHIVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDDIV
KVARQCPKERQTLLFSATYPEGIAKLAQQFMKNPEQITVQAQHEGSKIRQRWYQVKESER
LHAVSLLLDHFRPVSTLAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQFA
NRSCSVLVATDVAARGLDIAQLEAVINVDVTPDAEIHIHRIGRTGRVGQQGGAEGLALNL
ASMDEMGSVGKIEQLQGRESEWHPLAELTPAQGAPLAPPMATLQIVGGRKEKIRAGDVLG
ALTGDCGYAKDQVGKINVNEFSTYVAVERGIAAEAARKLSSGRVKGKSVKVRLLEL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatccccttccacagccggcggcccgccagccggcaacggttttgccacgctg
gcgctctcgccccagatgctggccaacctcacgcagctgggctacacgcagatgacggcg
atccaggcggccgcgctgccgccggcgctgctcggcaaggacctgatcgcgcaggccaag
accggcagcggcaagaccgccgcctttgcgctcgcgctgctctccaacctgaacccgcgc
cgcttcgccatccaggcgatggtgctgtgccccacgcgcgaactggccgaccaggtcacg
accgaaatccgccgcctggcgcgcgcggaagagaacatcaaggtggtcacgctctgcggc
ggcgtcgcgctgcgcgggcaaattgccagcctggagcacggcgcgcacatcgtggtgggt
acgcccggccgcatcatggaccacctggagcgcgagaacctgaatctcgaggcgctcaac
acgctggtgctcgacgaagccgaccgcatgctggacatgggcttcttcgacgacatcgtc
aaggtggcgcgccagtgccccaaggagcgccagacgctgctgttctcggccacctacccc
gaaggcatcgccaagctcgcgcagcagttcatgaagaaccccgagcagatcacggtgcag
gcgcagcatgaaggcagcaagatccgccagcgctggtaccaggtgaaggaaagcgaacgg
ctgcacgccgtgagccttttgctcgaccatttccgccccgtgagcacgctggccttctgc
aacaccaagcagcagtgccgcgacctcgtcgaggtgctgcagggccagggcttcagcgcg
ctggccctcttcggcgagctggagcagcgcgagcgcgaccaggtgctggtgcagtttgcc
aaccgcagctgctccgtgctggtggccaccgacgtggcggcgcgcgggctcgacattgcg
cagctcgaagccgtgatcaacgtcgacgtgacacccgacgccgaaatccacatccaccgc
atcggccgcaccggccgcgtgggccagcagggcggcgccgagggcctcgcgctgaacctg
gcgagcatggacgagatgggcagcgtcggcaagatcgagcagctgcagggccgcgaatcc
gaatggcacccgctggccgagctcacgccggcccagggcgcgccgctcgcgccgcccatg
gccaccttgcagatcgtgggcgggcgcaaggagaagatccgcgccggcgacgtgctgggc
gcgctcaccggcgactgcggctacgccaaggaccaggtcggcaagatcaacgtcaacgag
ttctcgacctacgtggccgtggagcgcggcattgcggccgaagcggcgcgcaagctctcg
agcggccgcgtgaaaggcaagagcgtgaaggtgcgcctgctggagctctga
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