Variovorax paradoxus S110: Vapar_5298
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Entry
Vapar_5298 CDS
T00916
Name
(GenBank) tRNA modification GTPase TrmE
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vap03016
]
Vapar_5298
Transfer RNA biogenesis [BR:
vap03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
Vapar_5298
Prokaryotic type
Methyltransferases
Vapar_5298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
Dynamin_N
AIG1
Arf
RsgA_GTPase
Ras
MCM
ABC_tran
ABC_ATPase
AAA_28
Roc
AAA_29
Motif
Other DBs
NCBI-ProteinID:
ACS21900
UniProt:
C5CSC0
LinkDB
All DBs
Position
1:complement(5621984..5623399)
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AA seq
471 aa
AA seq
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MLARTTDPIVAIATASGRGAVGIVRVSGARLAPLVDALCGRPLKPREATYLPFRDAAGEP
VDHGLAIHFPSPHSFTGEDVLELQAHGGTVVLQLLLARCLEAAAEADPVTGRPRLPGLRV
AEPGEFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGAFSREIHALRDALIH
LRMLVEATLDFPEEEIDFLQKADATGQLAKLQAQLAAVQQRAKQGALLREGIKVVIAGQP
NAGKSSLLNALAGAELAIVSAVAGTTRDVVSETIQIHGVPLHVVDTAGLRESSDEVEQIG
VARAWGQIEGADAVLFLHDLTRTGQPEYAAADAEILRVLQHKLPASVPVLDVWNKQDAAP
MPETAGAAQGIALSAKTGLGIEALREQLLAMAGWQAVPEGVYLARARHVQALGQVETHLA
LAASHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcccgcaccaccgatcccatcgtcgccatcgccaccgcctcggggcgcggggcg
gtcggcatcgtgcgggtgtctggcgcccggctcgcgccgctggtcgacgcgctctgcggc
cggccgctcaagccgcgcgaagccacctaccttccctttcgcgatgcggccggcgagccg
gtcgaccacggcctggccatccactttccctcgccccattcgttcacgggcgaagacgtg
ctcgaactgcaggcccatggcggaacggtcgtgctgcagctgctgctggcgcgctgcctc
gaagccgccgccgaggccgatccggtcaccggccggccgcgcctgcctggcctgcgcgtg
gccgagccgggcgagttcagccagcgcgcctttctcaacggcaagatcgacctcgcccag
gccgaagccattgccgacctgatcgacgccagcaccgaggcggccgcgcgcagcgccggg
cgttcgctgtcgggtgccttttcgcgcgagatccacgcgctgcgcgatgcgctgatccac
ctgcgcatgctggtggaggcgacgctcgactttccggaagaggaaatcgactttctccag
aaggccgatgcgacggggcagctggcgaagctgcaggcgcagctggcggcagttcagcag
cgcgccaaacaaggtgcgctgctgcgcgaaggcatcaaggtggtcattgcgggccagccc
aatgcgggcaagagttcgctgctcaatgcgctggccggcgccgagctggccatcgtgagc
gcggtggcgggcacgacgcgcgacgtggtgtccgagaccatccagatccacggcgtgccg
ctgcacgtggtggacacggccggcctgcgcgaaagcagcgacgaggtcgaacagatcggc
gtggcccgcgcctggggccagatcgagggcgccgatgccgtgctgttcctgcacgacctg
acacgcaccggccagcccgagtacgccgccgccgacgccgagatcctgcgcgtgctgcaa
cacaagctgcccgcgagcgtgccggtgctcgatgtctggaacaagcaggacgccgcgcca
atgccggagacggcgggtgcggcccaaggcatcgccctgtccgccaagaccggcctcggc
atcgaggcgctgcgcgaacagctgctggccatggccggctggcaggccgtgcccgagggc
gtctacctggcgcgggcgcgccatgtgcaggcgctgggccaggtggaaacgcacctggcg
ctggccgcgagccatctggcggcgcaggcgcagctgctcgacctgctggccgaggagctt
cgccttgcgcagaacgcactgaacgaaatcaccggcgaattcggcgccgacgacctgctg
ggcgtcatcttttctcgcttctgtatcggcaaatag
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