Variovorax paradoxus S110: Vapar_5606
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Entry
Vapar_5606 CDS
T00916
Name
(GenBank) peptidase M20
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00300
Lysine biosynthesis
vap01100
Metabolic pathways
vap01120
Microbial metabolism in diverse environments
vap01230
Biosynthesis of amino acids
Module
vap_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Vapar_5606
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vap01002
]
Vapar_5606
Enzymes [BR:
vap01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
Vapar_5606
Peptidases and inhibitors [BR:
vap01002
]
Metallo peptidases
Family M20
Vapar_5606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Motif
Other DBs
NCBI-ProteinID:
ACS22198
UniProt:
C5CZ41
LinkDB
All DBs
Position
2:313407..314675
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AA seq
422 aa
AA seq
DB search
MTDHSQAPARDVLRQFIDSHFQEQVETLAQLVQCPSDNPPGDCAPHAEVAARLLEGMDLV
VERHAVPPAFAQQHGMRSVTNLIVRERFGEGPVIALNAHGDVVPPGSGWTGSPYSGEVRD
GWLYGRGAAVSKSDFTTYAFALRALKQLRASGTPLAGTVELHLTYDEETGGMTGPGWILS
QGLSRPDYVISAAFSHHVVVAHNGCLHLEVILRGKSAHAARPDTGADAIEAAATLLPALY
HYRDQLAARPSQTPGITHPTMVVGLIQGGINTNVVADTLSLRIDRRIVPEETPEAVEAEL
RQVIEDACATLPGIAVEIRQILLARPFAPAPGAAEFAALMCREASAVMGKPVTPIGVPLY
TDARLYSEAGIPTVMYGAGPESLLEANGHRADERVPLDELRKATLVVAHTLLQLMVLPKE
TR
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccactcccaagccccagcgcgcgacgtgctgcgccaattcatcgacagccac
ttccaggaacaggtcgagaccctggcgcagctggtgcaatgcccgtccgacaacccgccc
ggtgattgcgcgccgcatgccgaagtggcggcccgcctgctcgagggcatggacctggtg
gtcgaacgccatgccgtgccgcctgcgttcgcacagcagcacggcatgcgcagcgtgacc
aacctcatcgtgcgcgagcgtttcggcgaggggccggtgattgccctgaacgcgcacggc
gacgtggtgccgccgggctcgggctggaccggctcgccctacagcggcgaggtgcgcgac
ggatggctgtacgggcgcggcgcggcggtttccaagtcggacttcaccacctacgccttc
gcgctgcgtgcgctgaagcagctgcgcgccagcggcacaccgctggccggcacggtcgag
ctgcacctgacctacgatgaagagaccggcggcatgaccggacccggctggattctttcg
caaggcctgagccgccccgactacgtgatctccgccgctttctcgcaccacgttgtcgtg
gcgcacaacggctgcctgcacctggaagtgatcctgcgcggcaagtcggcgcatgcggcg
cggcccgacacgggcgccgacgccatcgaggctgctgcgaccttgctgcccgcgctgtac
cactaccgcgaccagttggccgcacggccctcgcagacccccggcatcacgcatccgacg
atggtggtcgggctgatccagggcggcatcaacaccaacgtcgtggccgacacgctgagc
ttgcgcatcgaccgccgcatcgtgccggaagagacgcccgaagcggtcgaggcggaactg
cggcaggtcatcgaagacgcctgcgccacgctgccgggcatcgccgtcgagatccggcag
atcctgctggcccgcccgttcgcgcccgcacccggtgcggctgagtttgccgccttgatg
tgccgcgaggcgagcgcggtcatgggcaagccggtgacacccatcggcgtgccgctctac
accgacgcgcgcctctacagcgaagccggcatcccgaccgtgatgtacggcgccggcccc
gagtcgctgctcgaagccaacggccaccgcgccgacgaacgggttcccctcgacgagctg
cgcaaggcgaccctcgtcgttgcccacacgctgttgcagctcatggtcctgccaaaggaa
acccgatga
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