Variovorax paradoxus S110: Vapar_5874
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Entry
Vapar_5874 CDS
T00916
Name
(GenBank) 3-hydroxyacyl-CoA dehydrogenase NAD-binding
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap00071
Fatty acid degradation
vap00280
Valine, leucine and isoleucine degradation
vap00310
Lysine degradation
vap00362
Benzoate degradation
vap00380
Tryptophan metabolism
vap00410
beta-Alanine metabolism
vap00640
Propanoate metabolism
vap00650
Butanoate metabolism
vap00907
Pinene, camphor and geraniol degradation
vap00930
Caprolactam degradation
vap01100
Metabolic pathways
vap01110
Biosynthesis of secondary metabolites
vap01120
Microbial metabolism in diverse environments
vap01200
Carbon metabolism
vap01212
Fatty acid metabolism
Module
vap_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
Vapar_5874
00650 Butanoate metabolism
Vapar_5874
09103 Lipid metabolism
00071 Fatty acid degradation
Vapar_5874
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
Vapar_5874
00310 Lysine degradation
Vapar_5874
00380 Tryptophan metabolism
Vapar_5874
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
Vapar_5874
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
Vapar_5874
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
Vapar_5874
00930 Caprolactam degradation
Vapar_5874
Enzymes [BR:
vap01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
Vapar_5874
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
Vapar_5874
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
Vapar_5874
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
ECH_2
3HCDH
Sacchrp_dh_NADP
NAD_Gly3P_dh_N
Motif
Other DBs
NCBI-ProteinID:
ACS22458
UniProt:
C5D0B4
LinkDB
All DBs
Position
2:583195..585279
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AA seq
694 aa
AA seq
DB search
MKTLQYDLDTGTGVVTLTFDDLDASVNTFNDAWRTDMQAALDRMSEGGSRPRGVILASAK
DTFFAGANLKDVLAQWPADPAQVFARTEAGKKLLRRLETLGCPVVACIAGSALGGGFELA
LCAHHRVVVDDARVQLGFPEVGLGLIPAGGGVTKLVRLLGLESAMPYILESRVMSPSAAR
DAGLVHAVVPSGLGAAAALREAALAWIEAHPQAQQPWEVKGHRIPGGAPGCPKLAPLQML
APAMLFQKTRGRYPAAEAALSCMVEGAQLDVDTALRLETRALVGLLTHPVTRNLIQLFFD
RNAVRRGRSRPQGVAPWQAGKVSILGAGMMGAGIAQVCAAHSLNVVLKDVSIEFAEAGKE
RVRRLTDQRVHAGRMTPSQQAAILERIEPAAEVSALDGSDLIIETVFEDRALKGRATGEA
EPCLRPDGVFASNTSTLPITGLAEAVSMPERFIGLHFFSPADRMELVEIVVAEKTSAETL
ARAYDFVLQIGKTPIVVRDARGFFTSRTVGSYMAEGAQMLAEGIPATVVELAGRDAGMPV
GPLTVADEISLVTLAKIMEQNASDALDVGERFMIALCRQHGRKGRVLGGGYYDYTEDAPK
TLWPGLKAFERPETSWTLAALSERLLMRQAVEALRCEAEGVVTHAHDANVGSVLGFGFPA
WTGGVLQYVAAMGRDRFMAQAHALAAAHGGRFTP
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgaagactcttcagtacgacctcgacaccggcactggcgttgtcacactgaccttcgac
gatctcgatgcctctgtcaatactttcaacgatgcttggcggaccgacatgcaagccgcg
ctcgatcgcatgagcgaagggggcagccggccacgcggtgtcatcctcgcttccgccaag
gacacgttctttgccggcgccaacttgaaggacgtgcttgcgcagtggcccgccgatccc
gcgcaggtgtttgcgcgcaccgaggcgggcaagaagctgctgcgccgactggaaaccttg
ggctgtccggtggtggcgtgcattgccggcagcgcactgggcggcggcttcgagctcgca
ctgtgcgcgcaccaccgcgtggttgtcgacgatgccagagtgcaactcggctttccggag
gttggcctcggcctgattcccgcggggggaggcgtgaccaaactcgtgcgtctgctaggg
ctcgagtccgccatgccgtacatcctggagagccgagtgatgagtccgagcgcagcacga
gatgctggtctcgtacacgccgtggtgccgtccggtctcggcgccgccgcagcgctgcgc
gaggctgcattggcgtggatcgaggcccatccacaggcgcagcagccttgggaggtcaag
ggacaccgcatccccggcggcgcgccgggctgtccgaagctggcaccgctgcagatgctg
gcgccggcgatgcttttccaaaagacgagggggagatacccagccgctgaagcggccttg
agttgcatggtggaaggggcgcaattggatgtggacaccgcgctgcggctggaaacgcga
gcgctcgtcggcctgctgacacaccctgtcacgcgcaacctgatccaactcttcttcgac
cgcaatgccgtcaggcgggggcggtcacgcccacagggtgtcgcgccgtggcaagcgggc
aaggtaagcatcctgggggcgggcatgatgggggccgggatcgcgcaggtctgtgcagcg
cacagtctgaacgtggtgttgaaggatgtgagcatcgaatttgccgaggccggcaaggag
cgtgtccgccgtctgaccgatcagcgtgtgcatgcggggcgcatgacgccgtctcagcag
gctgcgattctggagcgcatcgagcccgccgccgaggtgtcggcgttggacggcagcgac
ctcattatcgagacggtgttcgaggatcgcgcgctcaaaggccgcgcgaccggcgaagcc
gagccgtgcctgcgtccagacggcgtcttcgcgagcaacacgtcgaccctgcccatcacc
gggctagccgaagcggtcagcatgcccgagcgcttcatcggcctgcacttcttttcacct
gccgacaggatggagctcgtggagatcgtcgttgccgagaagaccagtgccgagacgtta
gccagggcctacgacttcgtgctgcagatcggcaagacaccaatcgtggtgcgtgacgcc
cgcggcttctttaccagccgaaccgtcggctcctacatggctgaaggtgcgcagatgctg
gccgagggcattccggcgacggtggtggaactggccggccgtgacgccggcatgccggtg
ggtccgctgaccgtggcggacgagatttcgctggtcacgctggcgaaaattatggagcag
aacgccagtgatgcgttggacgtgggcgagcgcttcatgattgcgctatgcaggcaacac
ggtcgcaagggacgcgttcttgggggcggttactacgactataccgaggacgcacctaag
acactctggccgggcttgaaagcgtttgagcgccccgaaacgtcgtggacgctcgctgca
ttgagcgagcgcctactaatgcgtcaggctgtcgaggcgttgcgctgcgaggccgaaggc
gtggtgacgcatgcacatgacgccaatgtcggctcggtcttgggcttcggattccccgca
tggacaggtggcgtactccaatacgtcgcagcaatgggccgggacaggttcatggcgcaa
gcccatgcgcttgctgcagctcatggtgggcgattcacgccgtga
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