Variovorax paradoxus S110: Vapar_6248
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Entry
Vapar_6248 CDS
T00916
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vap03000
]
Vapar_6248
Transcription factors [BR:
vap03000
]
Prokaryotic type
Helix-turn-helix
Other families
Vapar_6248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
AAA_5
AAA
HTH_30
HTH_29
HTH_22
AAA_2
HTH_23
AAA_16
HTH_7
HTH_28
AAA_3
IclR_C
HTH_17
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ACS22811
UniProt:
C5D1P1
LinkDB
All DBs
Position
2:complement(984827..986953)
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AA seq
708 aa
AA seq
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MVDAFHAPASPPHGWTAPSALAVAPPRAGRSELIQQWHERCAALGLSRVERPDFDPLQHS
DLAVARERNQRLFTHAAPVMEMLLEQIVDTDSMIVLADTTGTILHSVGDDRFLQRANKVA
LTPGVSWAEHSKGTNAIGTTLVEETPTVVHGGEHFIHANNFLTCSAAPIFDPRGEMLGVL
DVTGDQRSYHQHTMGLVRMSARMIENQWLSDDYGNRLRLHFHGRAEFIGTLLEGIIVVGV
DGKILGANRSALDQLDMSIAALRMQSLPSLFGITASAVFDHFRTPLPTPMMLHAANGQQF
HVNARFNGPQRAVVLDMPVTSVEARMPTPARDAAAAAAARPPCPLAQAPFSGLRYLDTGD
AQIAATLQKVRRVINRDIPLLILGETGTGKELLARAVHQDSNRARQPFVAVNCASIPESL
IEAELFGYEDGAFTGARRKGAVGRIVQANGGTLFLDEIGDMPLPLQARLLRVLQERNVTP
LGSLKSIPVDIAVIGATHRNLREMIDAGTFREDLYYRLNGLVVRLPALRERSDLDVVARR
ILLAECPQDTPAIDASVLALFKAYAWPGNLRQLANVLRTAAVMGAGESHICEHHLSDDFL
EDVRRVRPQAAAIAPAFAPAPAPSPAPDFAATQAAYAAAAPEPLPPPSQDAEPSSAAAPS
APRTLGEAEIEMIRSALAAADGNISVASKRLGISRNTIYRKLRWNKAG
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgcctttcatgccccagccagccctccccatggctggaccgcgccgtcggcg
ctggccgtcgcgcccccccgggccggccgcagcgagctgatccagcagtggcacgagcgc
tgcgccgcgctgggcctgtcgcgcgtggagcggccggacttcgatccgctgcagcacagc
gacctcgcggtggcgcgcgagcgcaaccagcggctgttcacgcatgcggcgccggtgatg
gagatgctgctcgagcagatcgtcgacaccgacagcatgatcgtgctggccgacaccacc
ggcaccatcctgcactccgtgggcgacgacaggttcctgcagcgcgccaacaaggtggcg
ctcacgccgggcgtgagctgggccgagcattccaagggcaccaacgccatcggcaccacg
ctggtcgaggaaacgccgaccgtcgtgcatggcggcgagcacttcatccacgccaacaac
ttcctcacctgctcggccgcgccgatcttcgacccgcgcggcgagatgctgggcgtgctc
gacgtcaccggggaccagcgctcctaccatcagcacacgatgggcctggtgcgcatgtcg
gcgcgcatgatcgaaaaccagtggttgtcggacgactacggcaaccgcctgcggctgcac
ttccatggccgcgcggagttcatcggcacgctgctcgaggggatcatcgtggtgggcgtg
gacggcaagatcctgggcgccaaccgcagcgcgctggaccagctcgacatgagcattgcc
gcgctgcgcatgcagagcctgccgagcctgttcggcatcacggcctcggccgtgttcgac
catttccgcacgccgctgcccacgccgatgatgctgcatgcggccaacgggcagcagttc
cacgtcaacgcgcgcttcaacgggccgcagcgcgcggtggtgctggacatgcccgtgacc
tcggtggaagcgcgcatgcccactcccgcccgcgacgcggccgccgccgcggccgcgcgg
ccgccctgccctttggcgcaggcccccttctccggcctgcgctacctggacaccggcgac
gcgcagatcgccgccacgctgcagaaggtgcggcgcgtcatcaaccgcgacatcccgctg
ctcatcctcggcgagaccggcaccggcaaggagctgctcgcgcgcgccgtgcaccaggac
tcgaaccgcgcccggcagcccttcgtggcggtcaattgcgcctccatccccgaatcgctg
atcgaggccgagctgttcggctacgaggacggcgccttcaccggcgcgcgccgcaagggc
gcggtcgggcgcatcgtgcaggccaacggcggcacgctgttcctggacgagatcggcgac
atgccgctgcccttgcaggcgcggctgctgcgggtgctgcaggaacgcaacgtcacaccg
ctgggcagcctcaagtcgatcccggtggacattgccgtcatcggcgccacgcaccgcaac
ctgcgcgagatgatcgatgcgggcaccttccgcgaagacctctactaccgcctcaacggc
ctggtggtgcggctgccggcgctgcgcgagcgcagcgacctggacgtggtggcgcggcgc
atcctgctggccgaatgcccgcaggacacgcccgcgatcgacgcctcggtgctcgcgctc
ttcaaggcctatgcctggcccggtaacctgcgccagctggccaacgtgctgcgcaccgcc
gctgtgatgggcgcgggcgaaagccacatctgcgagcaccacttgtcggacgacttcctg
gaggatgtgcggcgcgtgcggccccaggcggcggccattgcgccggcattcgcacccgca
cccgcgccctctcccgcgccggacttcgctgcaacgcaggcggcctacgccgccgccgcg
cccgagcccctgcccccaccctcgcaagacgccgagccatcgtccgccgccgccccgagc
gcgccacgcacgctcggggaagccgagatcgagatgatccgcagcgcccttgcggcggcc
gacggcaacatctcggtcgcctccaagcgcctgggcatcagccgcaacaccatctaccgc
aagctgcgctggaacaaggccggctga
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