Vibrio aquimaris: FIV01_01325
Help
Entry
FIV01_01325 CDS
T06969
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vaq
Vibrio aquimaris
Pathway
vaq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vaq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIV01_01325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vaq03021
]
FIV01_01325 (rpoC)
03400 DNA repair and recombination proteins [BR:
vaq03400
]
FIV01_01325 (rpoC)
Enzymes [BR:
vaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIV01_01325 (rpoC)
Transcription machinery [BR:
vaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIV01_01325 (rpoC)
DNA repair and recombination proteins [BR:
vaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIV01_01325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QFT25097
UniProt:
A0A5P9CHC9
LinkDB
All DBs
Position
278813..283015
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEIEEMREELQSTNSETKRKKITKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLASPAEAEKAYRTK
SAELHARVKVRITETVKDEDGNSTTETKLVDTTIGRAMLWQIVPAGLPFSIVNQKLGKKQ
ISHLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPDAKYTEIEEAEAE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKLMMENLSSETVVNREGEGEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEDNSVDKIRVRSVVTCDADFGCCSQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQVKTTGTVKL
HNAKFVTNKQGKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKGDNEGVEAGETVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
IDAAGKDVMIPGTDMPAHYFLPGKAIVNIEDGAEVGVGDTLARIPQKSGGNRDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDTYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLAGEQVEYANVKIANRQLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQDRQAKRVEEQEGPS
VEQATDNLAALLNAGFSVDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgattcgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atttttggtccagttaaagattatgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacattgaacttgcttcaccagttgctcacatctggttcctaaaatcattg
ccgtctcgtatcggtctacttatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtggtaacagagcctggtatgactgatctagaaaaatctcagatgctt
accgaagaagagtatctagatcgtctagaagagtggggtgatgaattcacggctaagatg
ggtgctgaagcgatcaaagacctacttgcgtctatggatcttccggccgaaattgaagaa
atgcgtgaagagcttcagtctactaattcagagactaagcgcaagaaaatcactaaacgc
ttgaagctagttgaagcattcgttcaatcgggcaacaacccagagtggatgatcttaact
gtacttccggtacttccgccagatctacgccctctagttccactagatggtggtcgtttt
gcgacttcagatctgaacgatctataccgtcgcgtgatcaaccgtaacaaccgtttgaag
cgtctactagagcttgctgctccggacattatcgtacgtaacgaaaagcgtatgctacaa
gagtctgttgatgcacttctagataacggtcgccgcggtcgtgcgattacaggttcgaac
aagcgtcctctaaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttttaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcatcagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaaacttgagactcgtggtttagcgacgacgatcaaagctgcgaagaagatg
gtagagcgtgaagaagcggttgtatgggatattctcgatgaagtgattcgtgaacatcca
gtactactgaaccgtgcaccgacacttcaccgtctaggtattcaggcgttcgaaccagta
cttatcgaaggtaaagcgattcagctgcacccacttgtttgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgttcctctaactctagaggcgcagcttgaagct
cgtactttgatgatgtcgacaaacaacattctgtcgccagcatcaggtgatcctatcatc
gtaccttcacaggacgttgttttgggtctgtactacatgacgcgtgagaagattaacgtt
aaaggcgaaggtatgtaccttgctagcccagcagaagctgagaaagcataccgtactaag
tctgcagagctgcatgctcgcgttaaagtccgtatcactgagactgttaaagatgaagac
ggcaacagcactactgagactaagctagttgatacaactattggtcgcgcaatgctgtgg
caaattgtgcctgctggtcttccgtttagcatcgttaaccaaaagttaggtaagaagcaa
atctctcacctattgaacgaggcttaccgtaaactaggtctgaaagacacagttatcttt
gctgaccaaatcatgtataccggttttgcatacgcagcgctttcaggtgtgtctgttggt
atcgacgacatggttgtaccagatgcgaaatacactgaaatcgaagaagcggaagcagaa
gttcgcgaaattcaggaacagtaccaatctggtcttgttaccgcgggtgagcgctacaac
aaagttatcgatatttgggcatcgaccaatgatcgcgttgcaaaactgatgatggaaaac
ctgtcatcagagacagtggttaaccgtgaaggtgaaggcgaacagcaagagtcgttcaac
agcatctacatgatggctgactcaggtgctcgtggttctgctgctcagattcgtcagctt
gccggtatgcgtggtctgatggcgcgtccagatggttctatcatcgaaaccccgatcacg
gcgaactttaaagaaggcttgaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtctagcggatacggcactgaaaacagctaactcaggttatctgacacgtcgtcta
gtagatgtcgcgcaagatgttgttgtccatgagcacgattgtggcacacatgaaggtatc
gacatgatgcctcatattgaaggtggtgacgttaaagttgcactttctgagctagctctt
ggtcgtgtagttgctgaagatgttcttaagccaggcaccgaagatgttttgattccacgt
aatactctgattgatgagaagtggtgtcagatcatggaagacaactcagtagataaaatc
cgagttcgttcagtggtaacttgtgatgcagacttcggttgttgttcacagtgttatggt
cgtgatcttgcacgtggtcacctagttaaccaaggtgaagcagtgggtgttattgctgct
cagtctatcggtgaaccaggtacacagttaaccatgcgtacgttccacatcggtggtgca
gcatcgacggcagcagcagaaaacagcattcaagtgaagaccactggtactgttaagctg
cataacgctaagttcgtaactaacaagcaaggtaagcttgtgatcacttctcgtgcatca
gagctaaccattattgacgaatttggccgcaccaaagagaagcacaaacttccatacggt
tcactacttagcaaaggcgacaacgagggcgttgaagctggagaaacagtagcgaactgg
gaagctcacactatgccaatcatcactgaagtggcaggtcgtatccaatttgttgatatg
attgatggtgtaacggtttctcgtcaaactgatgacctaacaggcttgtcttctagcgaa
gtgaccgaagcggctgctagaccggctgcaggtaaagacatgcgccctgctatcaaactt
attgatgcggcaggcaaagatgtaatgattcctggtacggatatgccagctcattacttc
ttacctggtaaagcgattgttaacattgaagacggtgctgaagttggtgtcggtgatacg
cttgctcgtatacctcagaaatctggcggaaaccgagacatcactggtggtctaccacga
gttgctgacttgtttgaagctcgtaagccgaaagaacctgcgattcttgcagagcacaca
ggtactgtgagctttggtaaagagaccaaaggtaagcgtcgtctagtgatcactcgcgaa
ggtggagacacttacgaggagatgattcctaagcatcgtcagctcaacgttttcgaaggt
gagaaagttgaacgtggtgatgttatcgcagatggcccagagtctccacatgacattcta
cgtttacgtggtatccatgcggttactcagtacatcgcgaacgaagttcaggaagtatac
cgcttacagggcgttaagattaacgataagcacattgagactatcgttcgtcaaatgctt
cgcaagtgtacaatcacattcgctggtgactcagagttcctagcgggcgagcaagttgaa
tatgcgaacgttaagattgctaatcgtcagcttgaagccgagggtaaagaacctgcacgc
tttgaacgcgaattacttggtatcactaaggcgtctctagcaactgaatccttcatttca
gcggcatcgttccaggagacaactcgcgtactaacagaagcagcagtttctggtaagcgt
gatgagctacgtggtctgaaagaaaatgtgattgttggtcgattgattccagcaggtaca
ggtttcgcttaccaccaagatcgtcaagcgaaacgtgttgaagagcaagaaggcccatct
gttgaacaagcaacagataacttggctgctttgcttaacgcaggtttctcagttgatgag
taa
DBGET
integrated database retrieval system
