Vibrio aquimaris: FIV01_12250
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Entry
FIV01_12250 CDS
T06969
Symbol
hrpB3
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
vaq
Vibrio aquimaris
Brite
KEGG Orthology (KO) [BR:
vaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaq03019
]
FIV01_12250 (hrpB3)
Enzymes [BR:
vaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FIV01_12250 (hrpB3)
Messenger RNA biogenesis [BR:
vaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FIV01_12250 (hrpB3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
HA2_N
Motif
Other DBs
NCBI-ProteinID:
QFT27202
UniProt:
A0A5P9CNK4
LinkDB
All DBs
Position
complement(2636517..2638949)
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AA seq
810 aa
AA seq
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MPDLLSAIKTHSQVILKAAPGAGKSTHLPLKLLTENVVNGKIIVLEPRRLAARNIAYYLA
QQLGESIGQRVGYRVRGESRVSVNTQLEIVTEGILTRMIQMDPELTGISLVMFDEFHERS
IHADTALAFSLEIQDVLREDLKLVIMSATIDLDDIKVLMPNAKYIESQGRSFPVEYRYHP
LRPNQGYEQVVVAQIHSLIGKETGSLLVFLPGMSAIKRVAEGLTSLPSNVDVFPLHGQLG
FRQQQAAIQAPTKGQRKVVLSTNIAETSLTIEGIRIVLDSGLQRTARFDVKNGVTKLEQV
RIAQSSAEQRAGRAGRLEPGICIRLYSESSLNQQPYVPPAEILSSDLSSLAIELAQWGAS
EPSELKWLDIPPQASFLQSKRLLVNLGLLDDKHQLTSRGKAACDLGVEPRIAAMLTHSNS
PAWLSTAPAVAALLESPERSTVNFTHSVDSFKRGKHSQQKMVHQRGMALARKLNVAFSTE
SIEESLVAVMLATAFPDRVAQLRSGKVGKFLLANGHGAELNDEEKLSISEYLVIADLIRT
QSGSSRIFLAVELELLSVKKWFPGLLKNNDYLDWDDEKGRLIAESQQCIGRLVVERAPLP
TPPPEKMTQALLNYVRRKGLAVLDWSDNSTQLLERIRCAADWLPEQPWPETSDAQLLKNL
EHWLEPYLIGVNSLQAMKKIDLEPVLMSYLSWPLNKNIDQWLPVYYLLPTGTKKKIRYKQ
GYEPILSVRMQEMFGQQASPKIAQGRKKLLVELLSPAQRPLQITSDLASFWASAYKEVQK
EMKGRYPKHVWPDDPANHVATTKTKRQLNS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgccagacttattgtctgccatcaaaactcactcccaagttattcttaaagccgcacca
ggtgcaggtaagtcgacccaccttccattaaagttattaaccgaaaatgtggttaatgga
aagatcattgtgttagagccaaggcgtctagctgcacgtaatatcgcctactatcttgct
cagcagctcggagaaagcatcggtcagcgtgttggttatcgagtgagaggggagtctagg
gttagcgtcaacacgcaactagagattgtaactgaaggtatcttaacccgcatgatccaa
atggatccggagctgacggggatctcattggtgatgtttgacgaattccatgaacgtagc
attcatgcagatactgctcttgcgttttctctcgaaattcaggatgtactgcgagaggat
ctcaagttagtcatcatgtcagcgactatagacctcgatgatataaaagtgttgatgcct
aatgctaagtatattgaatctcaaggccgaagttttccagttgaatatcgttatcaccct
ttaagacctaatcagggatatgagcaggtggtcgtggctcaaattcacagtttaatcggc
aaggaaacagggtcattactggtatttttacctggtatgtcagccattaagcgtgttgct
gagggcttaaccagtttgcccagtaatgtcgatgttttccctttacatggacaattgggt
tttcgacagcagcaggcagcgattcaagcgcctactaaagggcagcgtaaagtggtgctt
tcgaccaatattgctgaaacttctttgaccatcgaaggcatacgtatagtgctcgattca
ggtttacagcgcactgcgagatttgatgttaaaaatggggtaactaagcttgagcaagtt
cgtattgcgcaatcatcagcagagcaaagagcggggcgggcagggcgattggagccgggt
atttgtataaggctatattctgaaagttcgttaaatcagcagccctatgtgccacctgct
gagatattgtcttcagatttatccagtctagctatagagcttgcccaatggggtgcttct
gaaccatcggaattaaagtggctggatattcctccacaagcaagctttttacaatccaaa
cggttactggtgaatctgggtttgttggatgataaacatcaattaacaagtcgaggcaaa
gccgcttgtgatcttggggtagaacctagaattgcagctatgttaacccattcaaatagc
cccgcatggctttccacagcacctgcagtggcagcgttattggaatcacctgagcgcagc
actgtcaactttacacattcggttgatagcttcaagcgaggaaaacattctcagcaaaaa
atggtgcatcaacgaggtatggctttagctcgcaagcttaatgtcgccttttctactgaa
tctatagaagaatctttggtagccgtcatgttagctaccgcttttcctgaccgagtcgct
cagctgcgtagtggaaaagtagggaagtttttgcttgccaatgggcatggggctgaattg
aatgatgaagaaaaattatctatttcagagtatctagttattgcagatcttattcgcacc
caatcaggttcttctcgtatctttttggctgtggagctagaattattatctgtgaaaaag
tggttccctggccttctcaaaaacaatgattatcttgattgggatgatgaaaaaggacga
ttaatcgccgaatctcaacagtgtattggacgcttggttgtcgagcgagcgcctttgccg
acacctcctcctgaaaaaatgacccaagctttactcaactatgtaagacgtaagggactg
gctgtattagactggtcggataatagcacgcaattacttgaacgtattcgctgcgctgct
gattggctaccagaacagccatggccagaaacctcggatgcacaattattgaaaaacctt
gaacactggttggagccatacttaattggagtcaactcattgcaagcaatgaaaaaaatt
gatcttgagcccgtattaatgtcctatctttcttggccacttaacaagaacatagatcaa
tggctacccgtttattatttgttacctacgggaacgaagaaaaagattcgctataaacaa
ggttacgagcctattttgtctgtacgaatgcaggaaatgtttggtcaacaagcgtcgcct
aagatagcacagggaagaaagaaattgctggtggaattgctttcacccgcgcagcgccca
ttacagataacaagcgatttggctagcttttgggcgagtgcatacaaagaagtacaaaaa
gaaatgaaaggacgttaccccaagcatgtatggcctgatgatccagctaatcatgtggcg
acgacgaaaactaagcgacaactgaactcatga
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