Vibrio aquimaris: FIV01_16100
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Entry
FIV01_16100 CDS
T06969
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vaq
Vibrio aquimaris
Pathway
vaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV01_16100 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaq03019
]
FIV01_16100 (rhlE2)
Enzymes [BR:
vaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIV01_16100 (rhlE2)
Messenger RNA biogenesis [BR:
vaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIV01_16100 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QFT27911
UniProt:
A0A5P9CPL4
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All DBs
Position
pTHAF100_a:complement(296293..297564)
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AA seq
423 aa
AA seq
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MPSFDQLGLSPTLTKTLNKLGFSTPTQIQEQAIPVVMQGKDVLAGAQTGTGKTAAFGLPI
LNKILDASDERDRQSNDVLALIVVPTRELAQQVFESLTAYAESTKIEIVTAYGGTSINTQ
TRNLEYGCDVLIATPGRLLDHLYCKNISLKKTKYLVLDEADRMLDMGFMPDVQRILKQIN
ANRQTLFFSATFDKKIKAIAYRLMNEPVEVQVTPSNSTAETVKQVVYPVDKKRKAELLAY
LIGSRNWHQVLVFTKTKQGSDSLAKELKLDGIVAASINGDKSQGARQKALDDFKSGKVRA
LIATDVAARGLDINQLEQVINYDMPYKAEDYVHRIGRTGRAGYEGIAISLMSKDEEYLLA
AIERLLDTRLPQEWLQGFEPSLEDTGDNELKQTKRSKSRSAEKRKLKAQMKIHSNRGKKK
PNK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgccttcatttgaccaattaggcttatctccaactttaaccaaaactctaaacaaattg
gggtttagcactccgacacagatacaagagcaagcaattcctgttgttatgcaaggaaaa
gacgtgcttgctggagcgcaaacaggaacaggcaaaacagcggctttcgggctgccaata
ctgaataaaatattagacgctagtgatgagcgagatcggcaatctaacgacgtactggct
ttgattgttgttccgacacgagagttggcgcagcaagtattcgagagtcttaccgcttat
gccgagtcaacaaagatagaaattgtcaccgcatatggtggaaccagtatcaatacgcaa
actcgtaatcttgaatatgggtgcgatgtccttattgcaacgccaggtcgattactggat
catctgtactgcaaaaatataagcttaaaaaaaactaaatacttggtactcgatgaagct
gatcgtatgttggatatgggctttatgcctgatgtgcaacgtattcttaaacagataaat
gctaatcgtcagactctatttttttcagcaacttttgataagaagattaaagctattgcc
tatcgactgatgaatgaacctgttgaagttcaagtcacgccatccaatagcactgcggaa
actgttaagcaggtggtatatcccgtcgataaaaagcgaaaagctgaattactcgcttat
ttgattggttctcgaaactggcatcaggtgctcgtctttaccaaaaccaagcagggtagt
gattctctggctaaggaactaaagctagatggcattgttgcggcatcaatcaatggagac
aaaagccagggcgctcgtcaaaaagcgcttgatgattttaaatccggcaaagtgagggca
ttgatagcgactgacgtagcggctagaggtttagatatcaatcagctagagcaagttata
aactacgatatgccttataaagcagaagattatgttcaccgtattgggcggactggtcgt
gcagggtatgaaggcattgctatttctctgatgagtaaagatgaggagtatctacttgcc
gcaattgaaaggcttttagatactcgtttgccgcaagaatggctacaaggttttgagccc
agcttggaagacacgggagacaatgagctgaaacaaactaagcgcagcaaaagccgttct
gcggagaagcgaaaacttaaggctcaaatgaaaattcattctaatagaggaaagaagaag
ccaaataaataa
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