Vibrio aquimaris: FIV01_19750
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Entry
FIV01_19750 CDS
T06969
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vaq
Vibrio aquimaris
Pathway
vaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV01_19750 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaq03019
]
FIV01_19750 (deaD)
03009 Ribosome biogenesis [BR:
vaq03009
]
FIV01_19750 (deaD)
Enzymes [BR:
vaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIV01_19750 (deaD)
Messenger RNA biogenesis [BR:
vaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIV01_19750 (deaD)
Ribosome biogenesis [BR:
vaq03009
]
Prokaryotic type
rRNA helicases
FIV01_19750 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QFT28638
UniProt:
A0A5P9CQW4
LinkDB
All DBs
Position
pTHAF100_a:complement(1137173..1139068)
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AA seq
631 aa
AA seq
DB search
MTDSVIQFSDLALNDAILSSLDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAF
SLPLLNKLDLAQRKPQAIVLAPTRELAIQVAAEMKNLGQNISGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPES
AQRVLFSATMPPMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAEARLVKLGAELEQDKEHKSLEKFTELVEKLQETLELDATT
LASILLKRQQGKRPLFYIGEDPMIQAIERDKQRRKERREGGRDGRGRDRSSSNQDWDTYQ
LQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMPSETAGKLRKLRI
RQKQVDAVVCDFDDFREPRGRRDSGRGRDGGRRDGGFRGNREGGRREGNFRGNREGGRRD
GERRFDRNRGGDNRGNYRGERGHNRDRRAEA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgtaattcagtttagcgatttagcgctaaatgacgctattctttcttct
ctagacggaatgggctttgtatcaccaaccccaattcaagctgctgctatccctcaccta
atggaaggcaccgatgcactaggtaaagctcagactggtactggcaaaaccgcagcattt
tcacttccactattgaacaagctagatctggctcaacgtaaacctcaggcgattgttctt
gcaccaactcgcgaactagcgattcaagttgctgcagaaatgaaaaacctaggccaaaat
atatccggtctaaaagttcttgagatctacggtggcgcatccatcgttgatcaaatgcga
gcgcttaagaatggtgctcacattgttgttggtactccaggtcgtgttcaagacttgatc
aaccgcgaacgcttgcatctagacgaagtacatacatttgttctcgacgaagcagacgaa
atgctaaacatgggcttcgtcgacgacgttacagaaatcatggagcatgctcctgagtct
gctcagcgtgttttgttctctgcaactatgcctccaatgctaaaaaacattgttgagcgc
tttttgcgtgagccagtgacaattgatgtcgcaggtaaaaatcacactgtagataaagtt
gagcagcaattctgggttgtaaaaggtgtcgagaaagatgaagcaatgtctcgcctttta
gaaactgaagaaactgacgcgtctattgtattcgttcgcactcgtcaagatacagagcgc
ctagcagactggctatgtgctcgcggctttaaagcttcagcgctgcatggtgatattcca
cagtctctacgtgagcgtactgttgatcatatcaaacagggtgtgatcgatattcttgtt
gcaacagatgttgttgctcgtggcctagacgttccaagaatcactcacgtatttaactac
gatattccttttgatgtagagtcttacattcacaggattggccgtacaggtcgtgcagga
cgtaaaggtaaagcgatccttttagttcgcaccaatcagatccgcatgcttcgtactatc
gaacgtgtgactaaatcatcgatggaagagatccaacttccactgcgcgataaagtagca
gaagctcgcttagttaagctaggtgctgaacttgagcaagataaagagcataaatctcta
gaaaaattcactgagctagtagaaaagcttcaagagacgttagagctagacgcaaccaca
ctggcttcaatcttacttaaacgtcaacaaggtaagcgtccattgttttacattggcgaa
gatcctatgatccaagcaatcgaacgcgacaaacagcgccgtaaagagcgtcgcgaaggc
ggtagagatggtcgtggtagagaccgtagctctagcaatcaagattgggatacctaccaa
cttcaagttggccgtgagcaaggcgttcaggttaaagatattgttggtgcattagccaat
gagcttggtctgaccaaaggctcaatcggcgctatcaaacttgcacaaggtgaaacttac
gtccagctacctaaagcaatgccttctgaaactgcaggtaaactgcgtaaactacgtatc
cgccaaaagcaggtcgatgctgtggtgtgtgactttgacgatttccgtgagcctcgtgga
cgtcgtgactcaggtcgcggtcgtgatggcggacgtcgcgatggtggtttccgtggtaat
cgcgaaggtggccgtcgtgaaggcaacttccgtggtaaccgtgaaggtggacgccgtgac
ggagaacgccgattcgatcgcaaccgtggtggcgataatcgcggaaactatcgcggtgag
cgtggtcataatcgcgaccgccgtgcagaagcataa
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