Vibrio aquimaris: FIV01_19755
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Entry
FIV01_19755 CDS
T06969
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vaq
Vibrio aquimaris
Brite
KEGG Orthology (KO) [BR:
vaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vaq03016
]
FIV01_19755 (rnb)
Enzymes [BR:
vaq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FIV01_19755 (rnb)
Transfer RNA biogenesis [BR:
vaq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FIV01_19755 (rnb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
QFT28639
UniProt:
A0A5P9CQW3
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All DBs
Position
pTHAF100_a:1139566..1141551
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AA seq
661 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGYGFLEVDNKTSVFIPPPYMKKCMHGDKV
RAIIRTEKEREVAEPEALLEQGINRFIGRVKWFKGKLNVNPDHPQLKKLSLKAKVTKGLK
RDDLKEGDWVVAHLIQHPLADDNGFLVEISEKITDADDKIAPWWVTLAQNELPNTEPPGI
ENWQIEDDADLERLDMTHLPFVTIDGASTRDMDDALYAQKLDDGSYELTIAIADPTAYIT
PSSEMDRTARQRGFTIYLPGRNIPMLPRELADDLCSLVENELRPALCCSVHIGADGELGD
DVKFFAATVKSHARLVYDHVSDWLENSESQSWQPDSSTASVINALYECSQARIQWREKNA
VVFPDRPDYRFELSEDNDVLAIHADIRRSANKIVEECMITANICAGKVLQSSFDSGVFNT
HSGFKQDKLSDVIDLINSENSEQTFTIESISTLSGFSELRRWLAKQDTSYLEHRIRKYQA
YSEIGNQALPHYAMGLELYATWTSPIRKYGDMVNHRMLKAHIMGKAPVQTADGDLGDELA
QHRKHHKTAERNVADWLYVRTLAEEPAEGTQFYGEIFDVSRAGLRVRLLENGAVAFIPGA
LILANKERLKCNSELGLVSIDDEIVYRAGDVIKLVLNEVNQETRSIVAKPVEVFAEAKEA
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataatcccctactggctcaacttaagcagcagatacaagaaaaccttccc
aagaaagaaggtacgattaaagcgaccgagaaaggctatggctttttggaggtcgataac
aaaacgagtgtctttattccgccaccatacatgaaaaaatgtatgcatggagataaggta
agagccattattcgtaccgaaaaagagcgcgaagttgcagagccagaagccctattggaa
cagggcattaaccgttttatcggtcgagttaagtggtttaaaggcaagttaaacgttaat
cctgatcatccacaacttaaaaaattatcgcttaaagctaaggtcacaaagggcttaaag
cgggacgatttgaaggaaggggactgggttgttgcccatctaatccaacacccattggct
gacgataatggttttttggtcgaaatatcagaaaagattacggatgccgatgacaaaata
gcgccttggtgggtgacactagcacaaaatgaattacccaataccgagcctccgggcata
gaaaactggcagattgaggatgacgctgatctagagcgtctagacatgacgcacttgcct
tttgtcactattgatggtgcgtcgactcgggatatggacgatgctctgtatgctcagaag
ttagatgatggaagctatgagctaacgatcgcgattgccgatcctactgcctatattacg
ccaagctctgaaatggatagaactgcacgtcaacgtggatttactatctatttgccaggg
cgcaatattcctatgctgccaagagagttagctgatgacctatgctctttggtagaaaac
gagttaagacctgcgctttgctgttctgttcacattggagctgacggtgaactaggcgat
gacgttaagttttttgcagccactgtgaaatcccacgcgcgtctagtttatgatcatgtt
tcagattggctggaaaacagcgagtcacagtcatggcaacctgatagcagcacagcttca
gtgataaacgccctttatgagtgttcgcaggctcgaattcagtggcgcgagaaaaatgcc
gttgttttcccagatcgcccagactaccgttttgaacttagcgaagataacgacgttctt
gctattcacgcagacattcgtcgtagtgcaaacaaaatagtagaagaatgcatgattact
gcaaatatttgcgcaggtaaagttcttcagtctagtttcgattcaggcgtgttcaatacc
cattctggttttaaacaggataagctgagtgatgttatcgatcttatcaacagcgaaaac
agcgagcagacctttaccattgagagtatttctacattgtctggcttctctgagcttcgc
cgttggttagctaagcaagataccagttatctcgaacaccgtattcgcaagtatcaagcg
tatagtgaaattggtaatcaagctctacctcattatgcaatggggcttgaattgtatgcg
acttggacctcaccgattcgtaaatatggtgacatggtcaaccatagaatgctgaaagct
catattatgggcaaagcaccggttcaaactgctgatggtgatcttggcgatgaattagcc
cagcaccgtaaacaccataaaacggcggagcgtaatgtcgctgattggctatatgtgcgc
actttagcggaagaaccagcagaaggtacccaattttatggtgaaatttttgatgtctct
cgagcagggttacgcgttcgtttactcgaaaatggtgcggttgcatttatacctggtgct
ctaatattggccaataaagagcgtttaaaatgtaattcagagcttggattagtgtctatt
gacgatgagattgtttaccgagcgggtgatgtcattaagcttgtgctaaatgaggtaaat
caagaaactcgtagcattgttgctaaacctgtcgaagtatttgctgaggcaaaagaagcc
gattaa
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