Vigna angularis (adzuki bean): 108319385
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Entry
108319385 CDS
T04660
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108319385
09123 Folding, sorting and degradation
03018 RNA degradation
108319385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108319385
03041 Spliceosome [BR:
var03041
]
108319385
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108319385
mRNA degradation factors
5'-3' decay
Lsm complex
108319385
Spliceosome [BR:
var03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108319385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
108319385
NCBI-ProteinID:
XP_017405988
UniProt:
A0A0L9T5R1
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Position
1:45875045..45876980
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AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQILLNGNNIAILVPGGSPESE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggctaataatccgtcacagcttctcccatctgagttgattgatcggtgtataggatcg
aaaatttgggtgataatgaagggtgacaaggagcttgttggtactcttcgaggctttgat
gtttatgtcaacatggtacttgaagatgttaccgaatacgagatcacgtctgaagggaga
cggataaccaagcttgatcagattttactcaatggaaacaacattgccatattggtccct
ggtggttcacctgagtctgaatga
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