Vigna angularis (adzuki bean): 108319561
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Entry
108319561 CDS
T04660
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108319561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108319561
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108319561
mRNA degradation factors
5'-3' decay
Decapping complex
108319561
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
108319561
NCBI-ProteinID:
XP_017406212
LinkDB
All DBs
Position
5:16434870..16448590
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AA seq
880 aa
AA seq
DB search
MDGFGVAAPSTDDHKPLRHTSKKGEVFDASQYAFFGKNAAEEVELGGLEDEDEYKAMLAV
EFSEDDLFINKEEAEDIRSLSDIDDLTTTFLKLNKVVSGPRSPGVIGERGSRENSSASEW
SQRDDIPHWFDQQSYDSEGQGSQDGNRWSSHPHSSLTQLYDSRPLYRTSSYPEQQRQLQH
QLQHCSSEPVPNWFDQAFYDSENTEDGKRWSSQPHSSTAQLQESKTLYRTSSYPDKRPEL
TRFSSEPILAPKSSFTSYPPPGGRSQQSSPNHSTGHLNIPFHTGGAQVALPSQNRSHYFN
SVLQLSGPKHESHFSGNVHPFTTGSPLNYRMQNPWVNQSGLYSGDHPNLLSNMLQQQLHH
QSGSLSPHLLTQLQQHRHLHPIQKPGRYMSGFQSHLFNPQLSSGSSMVSKYDHMLGLADT
REHRPKSTHKGKQSHRFLQQGSDASSQKNESGSLQFRSKYMTSDEIESILRMQQAVTHCN
DPYHDDYYHQACLAKKDGAKLKHSFSPTQLKDVPARIRANLDSPGFVQVDTLGRVSFLAN
RQPHALFEVDPLNSSTSGSSERNISEKPLEQEPLFAARVAIEDGLYLLLDVEDIDRFLQC
NQLQDGGTQLRRRRKVLMEGLASSLQLVDPLGKNGSKVGLGAKDDVVFLLLVSIPKGRKL
LSKYLQLLGSGSELMRIVCMTIFRHLRFLFGSLPSEPEAALSTSNLAKVVCKCVRGMDLG
ALGACLAAVVCSTEQPPLRPLGSTAGDGASLILVSVLERATELLTDPHGACSYIANRSFW
QASFDEFFGLLTMYCMNKYQSIMQSLLVQGTPNVSGIGSDAAKAISREMPVELLRVSLPH
TNDNQRKLLLDFAQRSVPVVGINNYTGSSGGHVNSETVLS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggatggctttggtgtcgctgctcccagcaccgatgatcacaaaccattgcgacacact
tccaaaaaaggtgaagtatttgatgcatcacaatatgcattctttgggaaaaatgctgcc
gaggaagttgagttgggggggttagaagatgaagatgaatataaggccatgcttgctgtg
gaattcagcgaggatgatttatttatcaataaagaagaggcagaggatataagatcactt
tctgatattgatgatcttactacgacttttttaaagttgaacaaggttgttagtggacca
agaagcccaggagttattggtgaacggggatcaagagaaaattcctctgcttctgaatgg
tcacaaagggatgacattccacactggtttgatcagcaaagctatgacagtgaagggcaa
ggatctcaggatggcaatagatggtcatcacacccccattcttctctaactcagttatat
gactcaaggcccttgtacagaacatcttcatatcccgagcagcagcgacagctgcaacac
caactccaacattgctctagtgaacccgttcctaactggtttgatcaggctttttatgat
agtgaaaatactgaggacggaaagcggtggtcatcacagccacattcctccactgcccaa
ttacaagaatcaaaaaccttgtatagaacatcttcgtatcctgacaagcggcccgagctt
actcggttttctagtgaacctattttggcaccaaaatcctcatttacatcgtatcctcca
cctggtggtaggtcccaacagtcttccccaaatcacagtacaggtcatttgaacattcct
tttcatactggtggagctcaggtggctttaccgtcacaaaatcgttctcattatttcaat
tctgtgctacagttgagtggaccaaaacatgagtcacatttcagtggaaatgtgcaccca
tttactactggctcacctctaaattatcgaatgcagaatccctgggtcaaccaatctggg
ttgtattctggagatcatccaaacctcctcagtaatatgttgcagcaacaattacaccat
cagagtggatcattatcacctcatttattgacccaattgcagcagcatagacatcttcat
cccattcagaaaccaggacgctacatgtcaggtttccaatcccatttatttaaccctcag
ctttcttctggatcatccatggttagcaaatatgatcatatgcttggtcttgctgatacc
agagaacacaggccaaaatcaactcataagggtaaacagagtcatcgttttttgcaacaa
ggttctgatgccagtagccagaagaatgaaagtggttcactacagtttaggtcaaagtat
atgactagtgatgaaattgagagtattcttagaatgcagcaagctgtgactcattgcaac
gacccctatcatgatgactattatcaccaagcttgtcttgctaaaaaagatggggctaag
ttgaaacattcatttagcccaacacaactaaaggatgttcctgcacgaatccgtgccaat
ctggactcccctggttttgttcaggttgatactttagggagggtttcattccttgctaat
cgtcaacctcatgctctttttgaagttgatccattaaactcttccactagtggtagttct
gagcgaaatatttcagagaagccccttgaacaggagcctctgtttgcagccagagtcgca
attgaggatggtctttatcttcttcttgatgtagaggacattgatcgttttttacagtgt
aatcaactacaagatggtgggactcaattaagacgaagacggaaggtccttatggaagga
ctagcatcatctctccaactcgttgatccactgggaaagaatggaagcaaagttgggctt
ggtgctaaggatgatgtagttttcttactgttagtgtctattcccaaagggcggaaactc
ttgtcaaagtatcttcagctacttggttctggtagtgagcttatgcggatagtctgcatg
accatctttcgtcatttgagatttttatttggtagtctaccatccgaacctgaagctgcc
ttgagtacaagtaaccttgctaaggttgtttgtaagtgtgttcggggaatggatcttggt
gccctaggtgcttgtcttgcagctgtagtttgttccacagagcaacctcctttacgcccc
cttggaagtacagctggagatggtgcctcccttattttagtatctgttcttgagagggcc
actgaacttcttactgatccccatggtgcttgcagctatatagctaatcgttcattttgg
caggcctcatttgatgaattttttggccttctcacaatgtattgcatgaataagtaccag
agtatcatgcaatcactgcttgtacaagggacgccaaatgtgtcaggtattggatcagat
gctgctaaagcaattagtagggaaatgcctgttgaactcttgcgtgtaagtcttcctcac
accaatgataatcagagaaaattattactagattttgctcagcggtctgtgcctgtggtt
ggaattaacaattatactgggagcagtgggggtcatgtgaactcagagactgtgcttagt
tga
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