KEGG   Vigna angularis (adzuki bean): 108319561
Entry
108319561         CDS       T04660                                 
Name
(RefSeq) protein PAT1 homolog
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
var  Vigna angularis (adzuki bean)
Pathway
var03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:var00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108319561
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:var03019]
    108319561
Messenger RNA biogenesis [BR:var03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108319561
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     108319561
SSDB
Motif
Pfam: PHD_NSD
Other DBs
NCBI-GeneID: 108319561
NCBI-ProteinID: XP_017406212
LinkDB
Position
5:16434870..16448590
AA seq 880 aa
MDGFGVAAPSTDDHKPLRHTSKKGEVFDASQYAFFGKNAAEEVELGGLEDEDEYKAMLAV
EFSEDDLFINKEEAEDIRSLSDIDDLTTTFLKLNKVVSGPRSPGVIGERGSRENSSASEW
SQRDDIPHWFDQQSYDSEGQGSQDGNRWSSHPHSSLTQLYDSRPLYRTSSYPEQQRQLQH
QLQHCSSEPVPNWFDQAFYDSENTEDGKRWSSQPHSSTAQLQESKTLYRTSSYPDKRPEL
TRFSSEPILAPKSSFTSYPPPGGRSQQSSPNHSTGHLNIPFHTGGAQVALPSQNRSHYFN
SVLQLSGPKHESHFSGNVHPFTTGSPLNYRMQNPWVNQSGLYSGDHPNLLSNMLQQQLHH
QSGSLSPHLLTQLQQHRHLHPIQKPGRYMSGFQSHLFNPQLSSGSSMVSKYDHMLGLADT
REHRPKSTHKGKQSHRFLQQGSDASSQKNESGSLQFRSKYMTSDEIESILRMQQAVTHCN
DPYHDDYYHQACLAKKDGAKLKHSFSPTQLKDVPARIRANLDSPGFVQVDTLGRVSFLAN
RQPHALFEVDPLNSSTSGSSERNISEKPLEQEPLFAARVAIEDGLYLLLDVEDIDRFLQC
NQLQDGGTQLRRRRKVLMEGLASSLQLVDPLGKNGSKVGLGAKDDVVFLLLVSIPKGRKL
LSKYLQLLGSGSELMRIVCMTIFRHLRFLFGSLPSEPEAALSTSNLAKVVCKCVRGMDLG
ALGACLAAVVCSTEQPPLRPLGSTAGDGASLILVSVLERATELLTDPHGACSYIANRSFW
QASFDEFFGLLTMYCMNKYQSIMQSLLVQGTPNVSGIGSDAAKAISREMPVELLRVSLPH
TNDNQRKLLLDFAQRSVPVVGINNYTGSSGGHVNSETVLS
NT seq 2643 nt   +upstreamnt  +downstreamnt
atggatggctttggtgtcgctgctcccagcaccgatgatcacaaaccattgcgacacact
tccaaaaaaggtgaagtatttgatgcatcacaatatgcattctttgggaaaaatgctgcc
gaggaagttgagttgggggggttagaagatgaagatgaatataaggccatgcttgctgtg
gaattcagcgaggatgatttatttatcaataaagaagaggcagaggatataagatcactt
tctgatattgatgatcttactacgacttttttaaagttgaacaaggttgttagtggacca
agaagcccaggagttattggtgaacggggatcaagagaaaattcctctgcttctgaatgg
tcacaaagggatgacattccacactggtttgatcagcaaagctatgacagtgaagggcaa
ggatctcaggatggcaatagatggtcatcacacccccattcttctctaactcagttatat
gactcaaggcccttgtacagaacatcttcatatcccgagcagcagcgacagctgcaacac
caactccaacattgctctagtgaacccgttcctaactggtttgatcaggctttttatgat
agtgaaaatactgaggacggaaagcggtggtcatcacagccacattcctccactgcccaa
ttacaagaatcaaaaaccttgtatagaacatcttcgtatcctgacaagcggcccgagctt
actcggttttctagtgaacctattttggcaccaaaatcctcatttacatcgtatcctcca
cctggtggtaggtcccaacagtcttccccaaatcacagtacaggtcatttgaacattcct
tttcatactggtggagctcaggtggctttaccgtcacaaaatcgttctcattatttcaat
tctgtgctacagttgagtggaccaaaacatgagtcacatttcagtggaaatgtgcaccca
tttactactggctcacctctaaattatcgaatgcagaatccctgggtcaaccaatctggg
ttgtattctggagatcatccaaacctcctcagtaatatgttgcagcaacaattacaccat
cagagtggatcattatcacctcatttattgacccaattgcagcagcatagacatcttcat
cccattcagaaaccaggacgctacatgtcaggtttccaatcccatttatttaaccctcag
ctttcttctggatcatccatggttagcaaatatgatcatatgcttggtcttgctgatacc
agagaacacaggccaaaatcaactcataagggtaaacagagtcatcgttttttgcaacaa
ggttctgatgccagtagccagaagaatgaaagtggttcactacagtttaggtcaaagtat
atgactagtgatgaaattgagagtattcttagaatgcagcaagctgtgactcattgcaac
gacccctatcatgatgactattatcaccaagcttgtcttgctaaaaaagatggggctaag
ttgaaacattcatttagcccaacacaactaaaggatgttcctgcacgaatccgtgccaat
ctggactcccctggttttgttcaggttgatactttagggagggtttcattccttgctaat
cgtcaacctcatgctctttttgaagttgatccattaaactcttccactagtggtagttct
gagcgaaatatttcagagaagccccttgaacaggagcctctgtttgcagccagagtcgca
attgaggatggtctttatcttcttcttgatgtagaggacattgatcgttttttacagtgt
aatcaactacaagatggtgggactcaattaagacgaagacggaaggtccttatggaagga
ctagcatcatctctccaactcgttgatccactgggaaagaatggaagcaaagttgggctt
ggtgctaaggatgatgtagttttcttactgttagtgtctattcccaaagggcggaaactc
ttgtcaaagtatcttcagctacttggttctggtagtgagcttatgcggatagtctgcatg
accatctttcgtcatttgagatttttatttggtagtctaccatccgaacctgaagctgcc
ttgagtacaagtaaccttgctaaggttgtttgtaagtgtgttcggggaatggatcttggt
gccctaggtgcttgtcttgcagctgtagtttgttccacagagcaacctcctttacgcccc
cttggaagtacagctggagatggtgcctcccttattttagtatctgttcttgagagggcc
actgaacttcttactgatccccatggtgcttgcagctatatagctaatcgttcattttgg
caggcctcatttgatgaattttttggccttctcacaatgtattgcatgaataagtaccag
agtatcatgcaatcactgcttgtacaagggacgccaaatgtgtcaggtattggatcagat
gctgctaaagcaattagtagggaaatgcctgttgaactcttgcgtgtaagtcttcctcac
accaatgataatcagagaaaattattactagattttgctcagcggtctgtgcctgtggtt
ggaattaacaattatactgggagcagtgggggtcatgtgaactcagagactgtgcttagt
tga

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