Vigna angularis (adzuki bean): 108320004
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Entry
108320004 CDS
T04660
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108320004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108320004
Spliceosome [BR:
var03041
]
Complex B
Other components
Prp19-related factors
108320004
Complex C
108320004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
zf-CCCH
zf-CCCH_3
RRM_occluded
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108320004
NCBI-ProteinID:
XP_017406832
UniProt:
A0A0L9T7W1
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Position
6:complement(739427..745526)
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AA seq
482 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNKEYFAE
EHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELCNKLVIKGLRLKLMWGR
PQTSKPESDSSDQARQQASVAHSGLLPRAVISQQQNQDQTQGVVYYNNPPPPQQERSYYP
SMDPQRMGALIPSQDGPPPGGPSGSGENKPGLEKQQMQHYPHSLMPPPPGQYHHQYYPPY
GYMPPAPPYHHHQYPPPYNAAGPPSQPSARNHPYQHSIQPGSGQAATAPAETGTSTSGSQ
QQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctcagagaccacgaagccgacggttgggagcgctccgattttcct
attatctgcgaatcctgcctcggcgacagcccatacgttcgaatgaccaaagcagactat
gacaaggagtgcaagatatgtacacggccattcactgttttcagatggagacctggtcga
gatgcaagatataagaaatctgagatctgtcagacgtgcagtaaattgaaaaatgtctgt
caagtgtgccttctggaccttgaatatggactaccagttcaagttcgggacactgctctc
agtattgattccaatgatgccattccaaagagtgatgttaataaggagtatttcgctgaa
gagcatgaccgtagggctagagctggtatagattatgaatcctcttatggtaaagtacgc
ccaaatgatactatcatgaagcttcaaaggacaacaccatattacaagaggaaccgagca
catatttgcagtttctacataaggggtgaatgtaccagaggagctgagtgcccttatcga
catgagatgccagttactggggagttgtctcaacaaaatattaaagatcgttattatgga
gtgaatgatccagtggctttgaagctacttggcaaggcaggagagatgaccactctggag
gctcctgaggatgagagcattaaaactctttatgttggtggacttgatgctagggtcact
gagcaggatttgagggatcacttctatgcccatggagaaattgaatccatcaaaatggtt
ctccagcgggcttgtgcttttgtaacatatacaaccagggaaggtgcagagaaagcagca
gaagaactctgcaacaaattggttattaagggcctaaggttaaagctgatgtggggcagg
cctcagacatcaaaacctgagtctgacagttctgatcaagcaaggcagcaggcatctgta
gctcacagcggattgttgcctcgggcagttatatcacagcagcagaaccaggaccaaact
caaggagtggtttactataacaatcctccacctcctcagcaggaaagaagctactaccca
tcaatggatcctcaaagaatgggtgctcttattccatcccaagatggtcctcctcctggt
gggccttctgggtcaggggagaacaagcctggtttggaaaagcagcagatgcaacattat
ccccattcattgatgcctcctccacctggtcaatatcatcatcagtattatcctccatat
ggttatatgcctccagctcccccttatcaccatcatcagtatccacctccatacaatgct
gcagggcctccatcacagccatcagcaagaaatcatccttatcagcattctatacagcca
gggtctggacaggccgcaactgccccagctgaaactggaacatcaacttcagggtcacag
cagcaataa
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