Vigna angularis (adzuki bean): 108320679
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Entry
108320679 CDS
T04660
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03013
Nucleocytoplasmic transport
var03015
mRNA surveillance pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108320679
09122 Translation
03013 Nucleocytoplasmic transport
108320679
03015 mRNA surveillance pathway
108320679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108320679
03041 Spliceosome [BR:
var03041
]
108320679
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108320679
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108320679
Spliceosome [BR:
var03041
]
Complex C
Other components
EJC/TREX
108320679
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108320679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
108320679
NCBI-ProteinID:
XP_017407676
UniProt:
A0A0L9T9P6
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All DBs
Position
9:836903..841701
Genome browser
AA seq
425 aa
AA seq
DB search
MGELKDTEAYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIV
DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCH
TRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALAR
DKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKK
FMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVIN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTS
TYMPN
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaattgaaggacaccgaggcttacgaggaagagctccttgattacgaagaagaa
gacgagaaagctcccgattctgccaagcctgcggaatccggcaagaagggctatgttggc
atccatagttcgggttttcgagactttttgttgaagccagagcttctgcgagccattgta
gattcaggatttgagcatccttcagaagtgcaacatgaatgcatccctcaagcaatctta
ggaatggatgtcatttgtcaagcaaaatctgggatgggaaagactgctgtctttgttctt
tctacacttcagcaagttgatcctgttcctggtcaagttgcagctctagttctttgccac
acaagagaactggcttatcagatttgccatgaatttgagagattcagcacatatcttcct
gatataaaggctgctgttttctatggtggcgtcaatatcaaggttcacaaagaattgctc
aagaatgaatgtcctcatattgttgttggcacacctgggaggattcttgctctggctaga
gataaggaccttggtttaaagaacgtgaggcatttcatacttgatgagtgcgacaagatg
cttgaatcacttgatatgagaagagacgtccaggagattttcaaattgactcctcatgat
aaacaagtgatgatgttttcagctacacttagtaaagagattcgacctgtttgcaagaaa
tttatgcaagatcctatggaaatctatgtggatgatgaggccaagttgacgcttcatggt
cttgtccagcactacatcaaattgcaagagtcagagaagaacaggaagttgaatgatctt
cttgatgctctggacttcaaccaagtagttatttttgtcaagagtgttagcagagcagca
gagttgaacaagttgcttgtggaatgtaacttcccatccatctgcatacattctgcaatg
tcacaggaagagagattgaaacgatacaaaggcttcaaggaagggaagcaaaggattctc
gtggcaactgacttagtagggagggggattgacatagaacgtgttaatatagttattaat
tatgacatgcctgattctgcggatacttacttgcacagggtaggaagagcaggtagattt
ggcacgaaggggcttgctattacttttgtttcctccactgccgactctgaagttcttaat
caggtgcaatctaggtttgaagttgatattaaggagcttcctgaacaaattgacacttcg
acatacatgccaaattga
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