Vigna angularis (adzuki bean): 108320978
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Entry
108320978 CDS
T04660
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108320978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108320978
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108320978
mRNA degradation factors
5'-3' decay
Decapping complex
108320978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_EDC4L
Beta-prop_TEP1_C
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
108320978
NCBI-ProteinID:
XP_017408074
LinkDB
All DBs
Position
6:20651590..20660555
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AA seq
1327 aa
AA seq
DB search
MMASPNNHHPNPNVHPPPPFDMHSFFNPPPPSSNPNPNPNPSPSSQYPPPFPAAAPFPFP
AFDLPLHHHRSLSFPTQPIPPPSNPNAGARLMALLSNPSPPPPDFAAPSSSPSTVLAAAT
AAAAALTRLPSGKVPKGRHLSGERVSYDVDIRLPGEVQPQLEVAPITKYGSDPNPVLGRQ
IAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVY
VWKISEGPDDEDKLQITANIVIAIQIVGEEKVEHPQICWHCHKQEILIVGMGKHVFRIDT
TKVGNGEAVVAEDPPLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIK
IWEDRKTQPLEVLRPHEGHPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASEEGWL
LPSDTESWKCTQTLELKSSAQPSRDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPN
PESTRMDYIAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPPPL
DNVGLEKSDSIVSADAITVEGFHTLDSSASKIMLQAGSTENGLVPRYPLSSGHVDVPITS
SNTEAKPVTLTPSSSEPDVICIPSPPLPLSPRLSRKLSDIRNPQSNLGDHVGEHPVNDYS
VDRQMDTIHRNLSETFNSDSKNDEKKVKQDHISSVLNPSVMFKQPTHLITPSEITKAGSS
SENNIIDGKSEGEGKMQDVGNAEVEVKVVGETRSNQIDEFGRGSQQNPVSDSKEKIFCSQ
ASDLGIEMAREGCVITAGDTYLTEESGQLDSTGAVSLAQPPDSGEDGLQDTAKDAHEKVS
DSSTSVAVPPSPVSNAKGKRQKGKNSQASGLSFSSPSVCNSTDSSNEPNGISSLPSAENA
FPQILAMQESLNQLLTMQKEMQKQMTMIVAVPVTKEGRRLEAALGRNMEKAVKANSDALW
ARIQEENAKNEKLLRDRIQQITGLISNFMNKDLPAILEKTVKKEMASVGQAVVRAMSPAV
EKIISSAIVESFQRGVGDKTVNQLDKSVSSKLEATVARQIQAQFQTTGKQVLQEALKSSF
ETSAVPAFEMSCKAMFEQVDATFQKGMAEHSAAVQQRLESAPTSLAMTLRDSINSASSIS
QTLSREVLEGQRKLVALAATRTNSGTLNPLPVQLNNGPLLREKVEVPLDPTQELGRLISE
RKFEEAFIGALHRSDVSIVSWLCSQVDLHGLLAMVPLPLSQGVLLSLLQQLACDINNDTT
RKIQWLTDVASAINPADPVIAMHTRPIFEQVYQILNHQRSLPSTSPTDLSSIRLLLHVVN
SMLMTCK
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttccccaaacaaccaccaccccaaccccaacgtccaccctcctcctcccttc
gacatgcactccttcttcaatcctccacccccttcgtccaaccctaaccctaaccctaac
cctagcccttcatcccaataccctccgcccttccccgccgccgcgcccttccccttcccg
gccttcgacctccctctccaccaccaccgttccctctccttccccacgcagcccatccct
ccgccctccaaccccaacgccggtgctcgcctcatggccctccttagcaacccctcccca
ccgccccctgacttcgcggcaccctcctcctccccctctaccgtcctcgccgccgccact
gccgccgccgcagccctcactcggctccctagcggcaaggtccccaagggaaggcatctc
tccggggagcgcgtatcctacgacgtggacatccggctgcctggcgaggtccagccgcag
ctggaagttgctccgatcacgaaatatgggtcggatcctaaccccgttttggggaggcag
attgcggtgaataagtcctatatatgctatgggctgaaacaggggaacattagggtgctt
aacatccacactgctgtcaggtctctcctcagaggccatactcagagggtcacagacttg
gcgttttttgctgaagatgttcatctcttggctagtgttggcacagatggccgtgtctac
gtgtggaagatctctgaaggtcccgatgatgaagataagcttcaaattacagccaatatt
gttattgctattcaaatagtgggggaggagaaagttgaacatcctcaaatttgctggcac
tgtcacaaacaagagattttgatagttggtatgggaaaacatgtttttagaattgacacc
acaaaggttggaaatggtgaagcggttgtggcagaggatcctcctctgagatgtcctgtt
gacaagctcattgatggggttcagctggtaggcacacatgatggagaggtgactgattta
tccatgtgccaatggatgaccaatcgattggtatctgcgtcacaggatggcacgataaag
atctgggaagatcgcaagacacagccacttgaagttttgagaccacatgaaggacatcca
gttttttctgctacattttttactgctcctcaccagcctgatcatattgttcttatcaca
gctggaccacaaaatagggaggtgaagctatgggtatcagcaagtgaagaaggttggctg
ctcccaagtgacactgaatcctggaaatgcactcagacgttggagttgaagagttcagct
caaccatctagagatgctttctttaatcaagttgcagcattgcctcatgcaggtctactt
ttacttgcaaatgcccagaggaatgctatatatgctgtacatttagaatatggtcctaat
ccagaatcaacacgcatggattatatagctgagtttactgtgaccatgcccattctgagt
tttactgggacaagtgatatactgcctcatggtgagcatatagttcaggtttattgtgtc
cagacacaggctattcagcaatatgctttggatttagcccagtgcttgcctccaccattg
gataatgtgggactagagaagtcagattccattgtttccgctgatgcaattactgttgaa
ggattccacactttagactcttctgcttccaaaataatgttacaagcaggtagtactgaa
aatggacttgtgcctagataccctttaagctctggccatgttgatgtgcctattacatct
tcaaacactgaagctaaacctgttacattaactccttctagtagcgaacctgatgtcatt
tgtattccatctccacctcttcctttaagcccgaggttatctaggaaactctctgatatc
aggaatccacagtcaaatttgggtgatcatgttggggaacatcctgttaatgattattct
gtcgacagacaaatggataccattcacagaaacctctctgagacatttaatagtgattca
aagaatgatgaaaagaaagtgaagcaggatcacatttctagtgtacttaatccttctgtc
atgtttaagcaaccaacccatctaatcacaccatctgagatcacaaaggctggttcctcc
tctgagaataacataattgatgggaagagcgagggagaaggaaagatgcaggatgtgggt
aatgctgaagtggaagtgaaggtggtgggtgagacaagatctaatcaaattgatgaattt
ggtcgagggtcacaacaaaatccagtttctgatagtaaagaaaaaatattttgttctcag
gcttcagatcttggtattgaaatggctcgagaaggctgtgtgataactgctggggacaca
taccttacagaggaatcaggacaacttgattcaacaggagcagtgtcactagctcaacct
cctgattctggcgaggatggactccaagatacggcaaaagatgcccatgaaaaggtttct
gactcatctacatctgtggctgtgccgccatctcctgtgtctaatgcaaaagggaaaaga
cagaagggtaaaaattctcaagcatcaggtctatctttctcatctccaagtgtgtgtaat
tcaactgattcatccaatgaaccaaatggaatttctagccttccgtctgcagaaaatgct
ttccctcaaattctggcaatgcaagaatcactcaatcagttattgacaatgcaaaaagag
atgcaaaagcaaatgacaatgattgtcgctgttccagtgacaaaagaaggtagaaggctt
gaggctgccctagggagaaacatggaaaaagctgtcaaggctaacagtgatgctttatgg
gctagaatccaggaggagaatgcaaaaaatgaaaagttgttacgagaccgtatccagcaa
attacaggtctgattagtaactttatgaataaagatctaccggcaatactggagaaaaca
gtaaagaaggaaatggcctcggttgggcaagcagtagtacgtgcaatgtctcctgctgtg
gagaaaataatatcttctgctattgttgaatccttccagagaggagtgggtgataagaca
gtgaaccaacttgataaatcagttagttcaaaactggaagctactgtagctaggcaaatc
caagcacaatttcagacaaccggcaaacaggtgcttcaggaggcactcaaatccagtttt
gaaacatcagcggttcctgcctttgaaatgtcgtgtaaagccatgtttgagcaagtggat
gctacatttcagaaaggcatggctgaacattcagctgctgtgcagcaacgacttgaatct
gctcccacttctttggcaatgacgctaagggattccattaattcagcatcatcaatttct
caaactttgagtagagaagtgcttgagggccagagaaagttagtagcacttgcagctaca
agaacaaactctggcacgttaaatcctttgccggtccagctgaacaatggtcctttactt
cgtgaaaaggttgaggttcccctggatcccacacaggagctaggaaggttgatttctgaa
cggaaattcgaggaggctttcattggagctttacatagaagtgatgtatccattgtatca
tggttatgttctcaggttgatttacatggactgttggcaatggttcctcttcctttaagt
caaggtgtactgctctcacttctgcagcaactagcctgtgacattaacaacgacacaaca
cgaaagatccaatggttaacagatgtcgcgtctgccataaacccagcggacccagtgatt
gcgatgcacacacggcccatctttgagcaagtctaccagatactcaatcatcaacgtagc
ttgccttcaacgtctccaactgatctctcaagtatccgtcttttattgcatgtcgtcaac
tccatgctcatgacatgtaaatga
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