Vigna angularis (adzuki bean): 108321005
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Entry
108321005 CDS
T04660
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03013
Nucleocytoplasmic transport
var03015
mRNA surveillance pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108321005
09122 Translation
03013 Nucleocytoplasmic transport
108321005
03015 mRNA surveillance pathway
108321005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108321005
03041 Spliceosome [BR:
var03041
]
108321005
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108321005
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108321005
Spliceosome [BR:
var03041
]
Complex C
Other components
EJC/TREX
108321005
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108321005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ribosomal_L26
Motif
Other DBs
NCBI-GeneID:
108321005
NCBI-ProteinID:
XP_017408116
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All DBs
Position
7:complement(10969781..10978059)
Genome browser
AA seq
426 aa
AA seq
DB search
MGDTKNEAYEEDLLDYEDEEEKEPEGANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICNEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLA
RDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRA
AELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDT
ASYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggggatacgaagaacgaggcgtacgaggaggaccttcttgactatgaagacgaagaa
gagaaggagcctgaaggtgctaataaagtcaacggtgaagctgtcaagaagggttatgtt
ggaattcacagttcaggattcagagattttttactgaagccagaacttcttcgggctata
gtggactctggatttgagcacccttctgaagtgcaacatgagtgtatacctcaagctata
cttggaatggatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtatttgtt
ctatctaccctgcagcagattgaccctgttgccgggcaagtttctgcacttgtcttatgt
catacaagggaattagcataccagatatgcaacgaatttgaaaggtttagcacctaccta
cccgatctaaaggttgctgtcttttatggtggcgtcaacataaaagttcacaaggatcta
ttgaagaacgaatgccctagtattgttgttggtacacctggaagaatacttggattggct
agggataaggacctttctttgaagaatgttagacatttcattttagatgaatgtgataag
atgctagaatctctggacatgagaaaagatgtgcaagctattttcaagatgacaccccat
gataagcaagttatgatgttttctgcaacgctcagcaaggaaatacgtcctgtctgcaaa
aaatttatgcaagatccaatggaaatttatgttgatgacgaagcaaagttgacccttcat
ggacttgtgcagcactacatcaaattgaaagaggaggagaagaacaggaagttgaacgac
cttcttgatgcattggacttcaatcaaattgttatctttgtgaaaagtgttagtagagca
gcggagctggacaaactgcttagagaatgcaatttcccatctatttgcattcattctgga
atgtctcaagaagaaaggttaaaacgatataagggttttaaggagggtcatacaagaatt
ctagttgcaacagatttggttggtaggggtatcgatatcgaacgtgtgaatatagttata
aactatgacatgccggattctgctgatacgtacttgcacagggttggccgcgccggacga
tttggaaccaagggccttgcaattacatttgtttcatgttccactgatgttgatgttctc
aacaatgttcaatccaggtttgaagttgatataaagcagcttcctgagcagattgataca
gctagctacatgccatcctag
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