Vigna angularis (adzuki bean): 108321142
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Entry
108321142 CDS
T04660
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03013
Nucleocytoplasmic transport
var03015
mRNA surveillance pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108321142
09122 Translation
03013 Nucleocytoplasmic transport
108321142
03015 mRNA surveillance pathway
108321142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108321142
03041 Spliceosome [BR:
var03041
]
108321142
03009 Ribosome biogenesis [BR:
var03009
]
108321142
03012 Translation factors [BR:
var03012
]
108321142
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108321142
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108321142
mRNA cycle factors
Stress granule specific factors
108321142
Spliceosome [BR:
var03041
]
Complex C
Other components
EJC/TREX
108321142
Ribosome biogenesis [BR:
var03009
]
Eukaryotic type
90S particles
Helicases
108321142
Translation factors [BR:
var03012
]
Eukaryotic type
Initiation factors
eIF-4
108321142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
108321142
NCBI-ProteinID:
XP_017408292
UniProt:
A0A8T0KKM3
LinkDB
All DBs
Position
4:complement(1893360..1897311)
Genome browser
AA seq
406 aa
AA seq
DB search
MATTSVVPANRRRAVNAAEELDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQ
QRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKV
ILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLV
LDESDEMLSRGFKDQIYDVYRYLPPDLQVNLISATLPHEILEMTNKFMTDPVRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVS
SMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacgtcggtggtgccggcgaaccggcggagggcggtgaacgcggcggaggaa
ttggacttcgagacgacggagggtgtgaaagcgatcgcgagcttcgaggagatggggata
aaggacgatctgctccgtggaatctaccagtacggcttcgagaagccctctgccattcag
caacgggccgtcacgccaatcattcagggccgtgacgttatcgcccaggctcaatccgga
accggcaaaacctccatgattgccctcaccgtttgccaggttgtcgatacctccgtcaga
gaggttcaggctttgatattatcaccaacaagggaactggcctctcagactgagaaggtt
atattggctattggggatttcattaacatacaggcacatgcttgcattggaggtaaaagt
gtgggtgaggatattaggaaacttgagtatggagttcatgtggtgtccggaactcctggc
cgagtctgtgacatgatcaagaggagaacattgcgcacgagggctatcaagatgctagtt
ctggacgaatctgatgagatgttgagcagaggatttaaagaccaaatttatgatgtgtat
agatatctcccccctgaccttcaggttaacttgatttctgctacccttcctcatgaaata
ctcgaaatgacaaacaaattcatgaccgatcctgtaaggatccttgtaaaacgtgatgaa
ttgacattagagggcatcaaacaattttttgttgcagtcgaaagggaggagtggaagttt
gataccctgtgtgatctttatgatacactcaccatcactcaagctgttatattctgtaac
accaagcggaaggttgactggttaactgaaaaaatgcgtaacaataatttcactgtctca
tcaatgcatggtgacatgcctcagaaagaaagagatgctattatgggagaatttcgtgct
ggaacaactcgggtactaataacaactgatgtttgggcccgtggtcttgatgtacagcag
gtgtctctagttatcaattatgaccttccaaacaatcgagagctttacattcatcgaatt
ggtcgctctggacgttttgggcgaaagggtgttgcaataaattttgtgaagagtgatgac
atcaagatcttgagagacattgagcaatactacagtactcagattgatgaaatgccaatg
aatgttgctgatcttatataa
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