Vigna angularis (adzuki bean): 108322943
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Entry
108322943 CDS
T04660
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108322943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108322943
03041 Spliceosome [BR:
var03041
]
108322943
03009 Ribosome biogenesis [BR:
var03009
]
108322943
03016 Transfer RNA biogenesis [BR:
var03016
]
108322943
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108322943
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108322943
Spliceosome [BR:
var03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108322943
Complex C
U4/U6.U5 tri-SnRNP related factors
108322943
Ribosome biogenesis [BR:
var03009
]
Eukaryotic type
Pre-60S particles
Helicases
108322943
Transfer RNA biogenesis [BR:
var03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108322943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108322943
NCBI-ProteinID:
XP_052733069
LinkDB
All DBs
Position
1:complement(62599564..62611566)
Genome browser
AA seq
981 aa
AA seq
DB search
MENEKKESPSLGKRREPELPVTVPETASKPKRARSAERTCVHEVAVPSGYVSSKDSELNG
TLSNPLHKGPMAKSYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRD
RQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSE
VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHK
QPCHVVYTDFRPTPLQHYAFPIGGSGLYLVVDENEQFREDNFLKLHDTFGKQNSAEGRRG
GKGGGRGGKGGNTSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTPE
EKETVEQVFRNAVLCLNEEDRCLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGL
VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQ
YEKALPDIEKRVSKLEQEVNLLDASGEAEVSEYHKLKLEIAQLEKKMMTKIIRPEIILYF
LVPGRLVKIREGGTDWGWGVVVNVVKKPSGGGYIVDTLLHCSPCSTENNSRPKPCPPRPG
EKGEMHVVPVQLPLISTLGKLRVSIPSDLRPLEARQSVLLAVQELVNRFPGGLPKLNPVK
DMDVRDSEIVELVNQIEEIEKKMFAHPMHKRQDVDQIKCFERKAEVNHEIQQLRTKMRDS
QLQKFREELKNRSRVLKKLGHIDGDGVVQLKGRAACLVDTGDELLVTELMFNGTFNDLDH
HQVAALASCFIPGDKSNEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVDEYVEST
VRPYLMDVIYSWSKGVNFADIIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEADLEK
KFAAASESLRRGIMFANSLYL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgagaagaaggaatcaccgtcgttgggaaagcgaagagaacccgaactacca
gttacagtcccagaaacggcatcgaagccgaaacgagctcgcagcgctgagcgcacgtgc
gtgcacgaggtcgccgttccgagcggttatgtctcaagcaaggactccgagctcaacgga
actctctcgaatcctctccacaagggtcccatggcgaagtcgtatcccttcacactcgac
cccttccaacaggtctccatcgcgtgtttggagcgcaacgagtccgttctcgtctccgcc
cacacctctgctggcaaaaccgccgtcgccgaatacgccattgccatgtccttccgcgac
cggcagcgtgtcatctacacgtctccgctcaaggccctcagcaaccagaagtatcgtgag
ctcagccaggagttcaccgacgtcggcctcatgactggcgacgtcacgctctcgccgaac
gccacgtgtctcgtcatgaccaccgagattctccgcgggatgctctaccgaggttccgaa
gtcctgaaagaagtggcgtgggttatattcgatgaaattcactacatgaaggatcgagaa
cgaggcgttgtatgggaagagagtataatttttctgcctccggcgattaagatggtgttt
ctctccgcaactatgtctaatgcgacggaatttgctgagtggatttgtaatatccacaag
cagccttgtcacgttgtgtacactgattttaggcctacgccgctgcaacactatgcgttt
cccatcggagggagtgggctgtatttggttgtagatgagaatgaacagttcagggaggac
aattttctgaagctgcatgatactttcgggaagcagaattcggctgaagggaggagagga
gggaaaggcggtggaagaggtgggaaaggtggcaatacttctggtggttctgacatttac
aagattgttaagatgataatggaacggaaattccaacctgttatcatctttagcttcagt
agaagagagtgtgaacaacatgcaatgtctatgtccaagcttgacttcaacaccccagaa
gaaaaggaaacagtggagcaagtttttcgaaatgcagtgctatgtttgaatgaggaagac
aggtgcttacctgctattgagctgatgttgcctcttcttcagcgagggattgctgtccat
cattctggacttcttcctgttatcaaagaattggttgagcttcttttccaggaaggtctt
gtcaaagccctatttgctactgaaacttttgccatgggtttgaatatgccagcaaaaaca
gtagtattcactgctgttaagaagtgggatggtgatagtcaccgatatattggatctggt
gaatatatacagatgagtggaagggctgggcgtcgaggcaaagatgagcggggaatctgt
atcataatgattgatgaacagatggaaatgaataacctcaaagacatggttttgggtaaa
cctgctcctttagttagtactttcaggcttagctattactcaattttaaatttgatgagc
cgtgctgagggtcagttcactgctgaacacgtaatacgaaattcatttcaccaatttcag
tatgaaaaggccttaccagatatagagaaaagggtgtcaaagctggagcaggaggtaaac
ttgcttgatgcttcaggggaggctgaagtgtctgagtatcataagctaaaattggaaata
gcacagctggagaagaagatgatgacaaaaataattaggccagaaataatcctttatttt
cttgtccctggtcgattggtcaaaatcagagaaggtggaactgattggggctggggtgtt
gtagtcaatgttgttaaaaaaccttctggtggtggttatatagttgatactttacttcat
tgttcaccttgttcaactgaaaacaattcacggccaaaaccatgtccacctcgtcccgga
gagaaaggtgaaatgcatgtggtccctgttcaattaccattaatatccactcttggtaaa
ctgagggtatctataccttctgatcttcgacccttggaagcaaggcagagtgtactgctt
gctgtacaggagcttgtcaatcgttttccgggaggtcttccaaagcttaaccctgtaaag
gacatggacgtacgtgactcagagatagttgaactagttaatcaaatagaggaaattgag
aagaaaatgtttgctcatcctatgcataagcgccaagatgtggatcaaattaaatgcttt
gagaggaaagcagaagtgaatcatgaaattcagcaactgaggacaaaaatgcgggattct
cagctacaaaaatttcgtgaagaattaaagaatcgctcccgagtcttaaagaagcttggt
catattgatggtgatggtgtagtacagttgaagggacgggcagcctgcttggttgacacg
ggggatgaactccttgttactgaattgatgtttaatggtacttttaatgaccttgaccac
catcaagttgctgctcttgcaagttgtttcatcccaggagataaatcaaatgagcagata
caactaagaacagagcttgctaggcccttgcaacaacttcaagatagtgcaagaaggata
gcagaaattcaacatgaatgcaaattggatataaatgtggatgagtatgttgaatcaaca
gtaaggccatacttgatggatgtaatatactcgtggtcaaagggagtaaattttgccgat
attatacaaatgactgacatctttgagggaagtatcattcggagtgctagaaggcttgat
gagtttttgaaccagttgcgtgctgctgcaaatgcagttggagaggctgacttggagaag
aaatttgcagctgcaagtgaaagccttcgaagaggcattatgtttgcaaattctctgtat
ttatga
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