Vigna angularis (adzuki bean): 108323260
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Entry
108323260 CDS
T04660
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
var
Vigna angularis (adzuki bean)
Brite
KEGG Orthology (KO) [BR:
var00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108323260
Spliceosome [BR:
var03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108323260
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
NRDE-2
TPR_MalT
UTP6_C
TPR_7
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
108323260
NCBI-ProteinID:
XP_017411144
UniProt:
A0A0L9TIB6
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Position
2:42467995..42478126
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AA seq
828 aa
AA seq
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MADSESVATEASAHSAAEAYASAGYAESGSNPTLEAGATADQPAGEGAQSTSTYGFGYSN
TGDVNAYTGDPNSVLQQSQFNATGDTKPAGGVPDANEASAGVGSTAAEPALASNYSSSVN
GGVVGSVTNGLENGNALENIDGSVDEKQLADGYGAALSAEEDRLWNIVRANSLDFSAWIS
LIEETEKVAEDNILKIRRVYDSFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQG
VTYSVDIWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWA
RLAIIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTAEEAAVSVASEATAGQGAEGEV
HPDGAEKSPKSVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIIGFETAIRRPYFHVRPL
NVGELENWHNYLDFLEREGDISKIVKLYERCVIACANYPEYWIRYVLCMEASGNMDLANN
VLARATQVFVKRQPEIHLFSARFKEQNGDIEGARAAYQLVHTETSPGLLEAIIRHANMER
RLGKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENV
LLSKPVLEALLHFEAIQPFPKRVDIDFLESWVCKFIMPNSESPSVASAIEREELSSIFLE
FLNLFGDVQSIKRAEDMHAKLFLPHRSMSELKKRHAEDFLASDKVKASRTYSAQSPAQSV
IGAYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLPAS
VPPSTAYGAYPPSYPAQPAVPQQPYAQPVAAPAQQPAAVPQAYYGSYY
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcagatagtgaatccgttgctaccgaagcatccgctcattccgctgctgaggcatat
gcttcggctggttatgccgagtctgggtcaaatcctactctcgaggcaggtgctactgct
gatcaaccggctggagaaggagctcagtccacttcaacgtatggatttggttattctaat
actggtgatgtgaatgcgtatactggggatccgaattctgttctacagcaatcccaattc
aatgctactggtgataccaagccagctggtggagtgccagatgctaacgaagcctctgct
ggggttggaagcactgctgctgagcctgctctggcttctaactacagttcatctgtcaac
ggtggtgtagtcggttcagtgacgaacggacttgaaaacggaaatgcattggaaaacatt
gacgggtcggttgatgaaaaacaactcgcagatggctacggagctgccttgtctgctgag
gaagatcgactgtggaatattgtaagagctaattctttagatttcagtgcctggatttcc
ttgattgaagagacagagaaggtagccgaggacaatattctgaagattcgaagagtttat
gattcctttctagcagaatttcccttgtgctacggttattggaagaaatatgctgaccat
gaggcacgacttggctctatagataaagttgttgaggtgtatgagcgtgctgttcaaggg
gttacatattcagtggacatttggttgcattattgcatatttgctataagcacgtatggg
gatcccgacactgttcgtaggcttttcgaacgaggattggcttatgttggaacagattat
ctttcttttcccctctgggataaatacattgaatatgagtacatgcagcaggactgggct
cgccttgccataatttacaccagaatattagagaatccaaatcaacaattagatcggtat
ttcagcagcttcaaggagttagctggaaaccgacctttgtcagagttacgaactgctgaa
gaagctgctgtaagtgttgcttcagaggctactgctggacaaggtgctgagggagaggtt
catcctgatggtgcagagaagtctcctaaatctgtaagtgctggcttaacagaagcagaa
gagttggagaagtatatcgccataagagaagagatctataaaaaagctaaagagttcgat
tctaagatcattggttttgaaacagccatccgaaggccctattttcacgtccggcctctc
aatgttggagagctcgaaaattggcacaactatctggactttttagaaagggaaggtgac
ataagcaagattgtcaagttgtatgagaggtgtgtcattgcatgtgccaattatcctgag
tattggatacgctatgttttgtgtatggaagccagtggaaatatggatcttgcaaataat
gttcttgcccgagccacccaagtctttgttaagagacaaccggagatacatcttttttct
gcgcggtttaaggagcagaatggagatatagagggtgctagagctgcctatcagcttgtg
catactgaaacttcccctggtcttcttgaagcaataatcaggcatgccaatatggaacgc
cgattgggaaaaatggaggatgccttctccttgtatgaacaggccatagctattgagaaa
ggaaaagaacattcacaaacattaccgatgttgtttgctcagtattctcgatttgtttat
ttggcttctgggaatgcagagaaggcaagacagattttagttgaggggctggagaatgtt
ttgttgtcaaaaccagttctcgaggccttattgcattttgaggctattcaaccctttcca
aagcgagttgatatcgactttctggagtcatgggtttgcaaattcataatgcctaactca
gagagtcctagtgtagctagtgcaattgagcgtgaggaactttctagtatttttctggag
tttttgaatctctttggagatgttcaatcaatcaagagagcagaggatatgcatgccaaa
ttgtttttgccacacagaagcatgtcagagttgaagaaacgtcatgctgaggatttctta
gcttcagacaaagttaaagcgtcaagaacttattctgctcaatcacctgcccaatccgtg
attggtgcgtatccaaatgcacaaaaccaatggactaattatggagtacaacctcaaact
tggcctccggttacacaagcacaggggcaacagtggactgctggctacacccagcaggct
tcttatggggcttatgctggatatggcggcaattatgcaaattctcaattgcccgcatca
gttccaccgagtactgcatacggggcctatcctccttcttatcctgcacagccggcggtt
cctcaacagccctatgcgcaacctgttgcagcccctgcacagcaacctgctgcagttcct
caagcctattacggtagttattactga
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