Vigna angularis (adzuki bean): 108325253
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Entry
108325253 CDS
T04660
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108325253
09123 Folding, sorting and degradation
03018 RNA degradation
108325253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108325253
03041 Spliceosome [BR:
var03041
]
108325253
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108325253
mRNA degradation factors
5'-3' decay
Lsm complex
108325253
Spliceosome [BR:
var03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108325253
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
108325253
NCBI-ProteinID:
XP_017413782
LinkDB
All DBs
Position
3:complement(24499010..24501183)
Genome browser
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGRDDGPGGRAKGIGRGLEEG
GPKGQGGGRGRGGPGGKPGGIRGAGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccctttcccttctcaagactgcccaaggccacccaatgttggtggaactgaaa
aatggggagacttataacggccatttggtaaattgtgatacatggatgaacatccatctc
agagaagtcatctgtacatctaaagatggagatagattttggcgtatgcctgagtgctac
attcgtggtaataccattaagtaccttcgggttcctgatgaggttattgacaaagtccag
gaagaaacaaagagccgtaccgatcgcaaacccccaggtgtgggacgtggaaggggaaga
ggtagggatgatggccctggaggacgggcaaaaggaattgggcgtggccttgaagaaggt
ggaccaaaaggacaaggaggaggtcgaggtaggggtggtccaggtggaaagcctggtgga
atcagaggtgcagggcgaggtagaggttaa
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