Vigna angularis (adzuki bean): 108326006
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Entry
108326006 CDS
T04660
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108326006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108326006
03012 Translation factors [BR:
var03012
]
108326006
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108326006
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108326006
Translation factors [BR:
var03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108326006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
Rad17
AAA_19
DUF4254
NACHT
ATPase
ABC_tran
FoP_duplication
BEX
Motif
Other DBs
NCBI-GeneID:
108326006
NCBI-ProteinID:
XP_017414696
UniProt:
A0A0L9TU45
LinkDB
All DBs
Position
3:40573263..40588399
Genome browser
AA seq
1030 aa
AA seq
DB search
MRSNLLRPTLNISHRSLAFLHLPSPKSFPANLPISSSVMAYRPNYQGGGRRGGSSAAGRG
GGRRGGGGGRGGRGEQRWWDPVWRAERLKQQQAEKEVLDENEWLDKIEKMKRGGEREMVI
KRNFSIADQKTLADMAYQHELYFHAYSKGKILVVSKVPLPDYRADLDDRHGSTQKEIRMS
TDIERKVGNLLNSSHSMGAAPSSLHSVSADLGHKQSAITIKTVSSQHTDSFKEKLSVALK
EKQELAQASDSLKEMKSFREMLPAFKMKSEFLKAVQENQVLVVSGETGCGKTTQLPQFIL
EEEISCLRGADCNIICTQPRRVSAISVATRISSERGESIGETIGYQIRLESKRSADTRLL
FCTTGVLLRQLVQDPDLKGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSAT
INADLFSKYFANAPTIHIPGFTYPVAEYFLEDVLEKSRYSIKSDFDNYEGNSRRRSKQQD
SKKDPLTEMFEDIDVDTNYKNYSLGVRKSLEAWSGVQIDLGLVEATIEYICRNEGSGAIL
VFLTGWDEISKLLDKLKGNNLLGDPHKFLILPLHGSMPTANQCEIFDRPPPNKRKIVLAT
NIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVC
YRLYPKLIHEAMPQYQLAEILRTPLQELCLHIKSLRLGTVASFLEKALQPPDPLAVKNAI
ELLKTVGALDEHEELTPLGRHLCNIPLDPNIGKMLLMGSIFQCLNPALTIAAALAYRNPF
VLPINRKEEADAAKQSFAGDSCSDHIALLKAFEGWKDAKRSGNEKQFCWDNFLSPVTLRL
IDDMRMQFLNLLSDIGFVDKSRGPNAYNQYSHDLEMVCAILCAGLYPNVVQCKRRGKRTA
FYTKEVGKVDIHPASVNAAVHLFPLPYIVYSEKVKTTSIYIRDSTNISDYALLLFGGNLV
PSKSGEGIDMLGGYLHFSASKSVIELIRKLRGELDKLLNRKIEEPGFDVSSEGRGVVAAA
VELLHSQVIR
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagcaaccttttgcgccctactttgaacatatcccatcgtagcctcgcttttctg
cacctgccctcacccaaatctttccccgcgaaccttccgatttcctcttccgtcatggcc
taccgccccaactaccaaggcggcggccgcaggggaggatcctccgccgccggtcgagga
ggcggccgtcgtggaggtggtggaggacgtggcggacgcggcgagcaaaggtggtgggac
cctgtttggcgcgccgagcgcctcaaacaacaacaagccgagaaggaggtgctagatgag
aatgagtggttggataagatagaaaagatgaaacgaggaggggagcgggagatggtgatt
aagcgtaactttagtattgcagatcagaaaaccctagctgatatggcctatcagcatgaa
ctctacttccatgcttacagtaaagggaagattctcgttgttagcaaagttccattgcct
gattatcgtgcagatcttgatgatcgtcatggatcaacacagaaagagattagaatgtcc
actgacattgagaggaaagtaggaaaccttttgaatagttcacattcaatgggggcagcg
ccatctagtctgcattctgtgtcagctgaccttggacataaacaatctgcaatcacaata
aaaaccgtttcttcacaacatactgattcttttaaggagaaacttagtgttgcgctcaaa
gaaaagcaagaacttgcacaggcaagtgatagcttgaaggaaatgaaatcatttagggag
atgcttcctgcatttaaaatgaagtctgagtttctaaaagccgttcaagaaaatcaggta
ttagtagtttcaggagagacaggttgtggtaaaacaacacagttgccacaatttattttg
gaagaagaaatatcgtgtttgcgtggagctgattgcaacataatttgcactcagcctcgt
cgggtatctgctatttctgttgcaactcgaatatcttctgagagaggtgagagtattggg
gaaacaattggatatcaaatccgtctggaatcaaaacgttctgcagatacacgcctgctt
ttctgcaccactggtgttttacttaggcagttggtacaagacccagacttgaaaggtgtt
agtcatttgctggtggatgaaattcatgaaagaggcatgaatgaagactttttaattata
attttacgtgaccttcttccacgacgtccagatttgcgtctcattttgatgagtgccact
attaatgctgatttgttctctaaatactttgcaaatgccccaacaatacacataccggga
tttacttatcctgtggcagagtacttcttagaagatgtgttggagaaatctcgatacagc
atcaagtcagattttgacaattatgaggggaattcaaggaggagaagcaaacaacaggat
tcaaagaaggatcccttgactgaaatgtttgaggatatagatgttgatactaattacaaa
aattacagcttgggtgtaagaaaatctcttgaagcttggtcgggtgtgcagattgatttg
ggattggtagaggctacaattgaatatatatgtcggaatgaaggtagtggagcaattctt
gtatttctcactggctgggatgaaatctctaaactacttgacaaacttaaaggaaataac
ttactcggagaccctcacaagtttttgatccttcctttacatggttcaatgccaactgcc
aaccaatgcgaaatatttgatcgtcctcctccaaacaagaggaaaattgttctggcaaca
aatattgctgagagtagcatcaccatagatgacgttgtgtatgtcatagactgtggcaaa
gcgaaggagaccagctatgatgctctaaataagcttgcctgcttgttgccatcatggatt
tcaaaggcttcagctcatcagagacgtggacgagctggtcgagtgcaacctggagtttgt
tataggttatacccaaaactgatccatgaagcaatgcctcaataccagttagctgaaatc
ctccgaacacctttgcaagagttgtgccttcatattaaaagtttgcggcttggaactgtg
gcatcatttttagaaaaggcacttcaaccaccagatcctttagctgttaagaatgctatt
gaacttcttaaaacagttggggcattagatgaacacgaggagctcactccactgggtcgc
catctttgtaacatacctttggacccaaacataggaaagatgcttctcatgggctctatc
tttcaatgcctcaatcctgccttaactattgctgctgctcttgcttaccgcaacccgttt
gtcttacccataaacagaaaagaggaagctgatgcggcaaaacaatcttttgctggtgat
tcttgcagtgatcacatagcccttctcaaagcttttgagggatggaaggatgcaaaacga
agtgggaatgagaagcagttttgttgggataattttctgtcccctgtaaccttgcggttg
attgatgatatgaggatgcagtttctcaatttattatctgacattggatttgttgacaag
tccaggggacctaatgcttacaaccagtacagtcacgatttggagatggtttgtgcaatt
ctttgtgccgggctctaccccaatgttgtgcagtgcaaaagaagagggaaaaggacagca
ttttacactaaagaagtagggaaggttgacatccatcctgcttctgttaatgctgcggtt
catctctttcctctgccgtacattgtgtatagtgaaaaggtgaaaacaaccagcatctat
attagagactctacgaatatttcagattatgccctacttctatttggtggtaatctagtc
cccagcaaaagtggtgagggcattgacatgcttggaggttaccttcatttctctgcttca
aaaagtgttatcgagttaataaggaaattacgtggggagcttgacaagcttctgaacaga
aaaattgaagaacctggatttgacgtttcttcagaaggaaggggtgtggttgccgctgct
gttgagttactgcatagtcaagtcattagataa
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