Vigna angularis (adzuki bean): 108326081
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Entry
108326081 CDS
T04660
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108326081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
var03021
]
108326081
03019 Messenger RNA biogenesis [BR:
var03019
]
108326081
Transcription machinery [BR:
var03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108326081
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108326081
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
108326081
NCBI-ProteinID:
XP_017414838
LinkDB
All DBs
Position
3:complement(4549240..4556811)
Genome browser
AA seq
964 aa
AA seq
DB search
MFSQNLILPPENPRQAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLVAG
VPVPPPTTDEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVAA
DQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFP
PSVLRKIEAELQFSAAVNTQSSTLNAVRASESPRPSHGIHVNPKYLRHLDHSTADSVGAE
KLDSSGNANNTNFGILGSKTHQILSGSGRLGISSSPSRSGLDRPLSASMDEYAADSSANR
LIERDSSHPAVDYGVGKAIGRDMELSEWQRKQYAGDGRNRFSTSITYSLSNGHQRQSPRA
LIDAYGSDKSQENSSTKRLLVERLDRNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSR
NNSILPSTIGFTRERPVVAANAALSEHDSRKGVWSSGSQLPPVDDSSAVAEDAFASLGFR
RPPLGQVPGFQNHVNHSLGSSHHLSNSSQHIFGNRGRARTLTFPPIDNIHNADTNPYRVR
PAVSRMVSGRVSNVEPRPSVLPATPPSVNLNVTRPPALNPITPLQKHVRSQFEALHTSNP
VVNHVNKSSFMPEQSFDSVEKKDASILKIHQLPNQLPGLISSNQQIHRQAPQLQFFPPSQ
DSSNSQFSHGSSLQGHGASISTAMSNPLPIMQFHLPLQNVANNPLHLQGGARPPLPPGRP
LAPPQMIPHPNASPFMSSQQPTVGYTNLISSLMSQGVISLANQLPTQDSVGTEFNPDILK
LRYESAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSD
RMWLSGAEALGTESVPGFLPTETIEEKIDDEELAVPAEEDQNTCALCGEPFDEFYSDEME
EWMYRGAVYLHAPTGTTSGMDRSQLGPIIHAKCRSESNMAPSEDLGPDEKGGDEEGTQRK
RRRS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgttctcccaaaatctgattctccctcccgaaaaccctagacaagcggcctcgttcgcc
tcaaaacccatgagcaatgagatcgcaatcgctgcgcagaaacctcctccgtcgattctc
gttggccgcttcaaggcactcctcaagcagcgtgatgacgaactcagactcgtcgcaggc
gtccccgttccgcccccgacaacagatgaaatcgtccagatttacgacctccttttgtcg
gaactcacctgtaatttgaagcctatcatcaccgatctcacaatcatcgccgaacagcag
agggagcacgccaaaggcatcgctgatgcaatttgcgctcggattctcgaggtggcagca
gatcaaaagctcccctcactctatttgttggacagtattgtgaagaattttgggcaggaa
tacattaaatacttctctttacgtctgccagaagtcttttgtgaggcatacaggcaggtt
cagcctagtttgcatcctgctatgcggcatctttttgggacatggtcaaaagtttttccc
ccttctgtcctacgcaagattgaagctgaattgcaattttccgcagcagttaatacccaa
tcatccaccctgaatgctgtaagggcttctgaatctccgcggcctagtcatggcatacat
gttaatccaaaatacctgcgccacttggatcactcaaccgccgatagtgttggtgctgaa
aagttggattcatcaggaaatgccaataatacaaactttggcattctaggtagtaagaca
caccaaattttatcaggcagtggcaggctgggaatatcctcttccccttcaagaagtgga
cttgataggcctttgtctgcatccatggatgagtatgcagctgacagttctgctaacaga
ttaattgagagagactcttctcatcctgctgttgattatggagtaggcaaggcaataggt
agagatatggagttgagtgaatggcaacgaaagcagtatgctggtgatggtcgtaatagg
ttttcgacttctatcacatacagccttagtaatggacatcagcgtcaaagtcccagagct
ttaatcgatgcatatggcagtgacaaaagtcaagaaaattcaagtactaagcgtttgcta
gtagaacggcttgatagaaatggtatagacaacaaggtattgcctacatcatggcagaat
accgaagaggaggagtttgattgggaagatatgagtccaaccttaactgatcatagtaga
aataacagtatattgccttcaactattggattcaccagggaaaggcctgttgttgcagct
aatgccgctttgtcagagcatgattccaggaagggggtttggtctagtggatctcagctt
cctccagtggatgattcttctgctgtagcagaagatgcatttgcttctttgggttttcga
cgaccaccgctgggacaggtacctggattccaaaatcatgtcaatcatagtctgggttct
tctcatcatctgtccaactcgtcacaacatatctttggtaataggggccgggcaagaact
cttacatttcctcctattgataacattcacaatgccgatacaaatccatatcgggttcga
cctgcagtgtcaaggatggtttctggccgtgtctctaatgtggaacctagaccatcagtt
ttgcctgcaactccgccttctgtaaatttgaatgtcactcgaccacctgcattaaatcca
ataactccattacaaaaacatgttaggagtcagtttgaagctttacatactagtaaccct
gttgtgaatcatgtaaataaatcttcgtttatgccagagcagtcatttgacagtgttgag
aagaaggatgcaagtattttgaagatacatcagttgcctaatcagcttcctggactaatt
tcgtccaaccagcaaattcacaggcaagcaccacaactgcagtttttcccaccatctcag
gattcgtcaaactcacaatttagtcatgggagttctttgcagggacatggtgcttctata
agtactgccatgtcgaatccgttacctattatgcaattccatttgccactccaaaatgtt
gcaaataaccctttacatttacagggtggagcccgtccacctttacctccaggtcgccct
cttgctccaccacaaatgatacctcatccaaatgccagtccatttatgtcaagccaacag
ccaactgttggatatactaatttaattagttctctaatgtctcaaggtgtgatctcattg
gccaaccagctgcctacacaggattctgttggaactgagttcaatccagatattctgaag
cttcgttatgagtctgctgtcaatgccttgtatggtgatctcccaagacaatgcacaact
tgtggactccgattcagatgccaagaggaacacagtagtcatatggattggcatgtgaca
aagaatcggatgtctaaaagccggaagcagaaaccctctcggaagtggtttgtgagtgac
aggatgtggcttagtggtgcagaggcattaggaactgagtcagttccaggttttttgcct
acggaaaccatagaagaaaagatagatgatgaagagttggctgttccagcagaagaggat
cagaatacttgtgcattatgtggagagcctttcgatgagttttacagtgatgaaatggag
gaatggatgtataggggagctgtatacctccatgctcccacggggacaacatcaggcatg
gacaggtcacagttaggccccataattcatgctaagtgcagatcagaatctaatatggca
ccatctgaagatcttgggccggatgaaaagggtggtgatgaagagggtacccaaaggaag
cgaaggcgtagttga
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