Vigna angularis (adzuki bean): 108326298
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Entry
108326298 CDS
T04660
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108326298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108326298
03009 Ribosome biogenesis [BR:
var03009
]
108326298
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108326298
Spliceosome [BR:
var03041
]
Complex A
U2 snRNP components
U2 related factors
108326298
Complex B
108326298
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108326298
Ribosome biogenesis [BR:
var03009
]
Eukaryotic type
90S particles
Helicases
108326298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
T2SSE
ABC_tran
AAA_30
AAA_7
Flavi_DEAD
FtsK_SpoIIIE
AAA_33
TsaE
PhoH
NACHT
AAA_29
Motif
Other DBs
NCBI-GeneID:
108326298
NCBI-ProteinID:
XP_017415197
LinkDB
All DBs
Position
2:complement(21911559..21915345)
Genome browser
AA seq
721 aa
AA seq
DB search
MGTERRRKLSLFDVVDDTVGKMAKSNGGFVGSNLINRWNGKPFSQRYHDILEKRKTLPVW
HQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDIESPDKRRKMMIACTQPRRVA
AMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLRNRPDMKLVVMSATLEAEKFQGYFSGAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHKDEPPGDILVFLTGEEEIEDACRKISKEISNLGD
QVGPVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGQPGRKIVISTNIAETSLTIDGIVYVI
DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTK
LGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMARFNLKLCS
TDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPDWVIYN
EYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKEEARSR
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaggaggaaactgagcttgttcgacgtggtggacgacactgtcggt
aagatggccaaatcaaacggcggattcgtcggtagcaacctcatcaaccgatggaacggg
aagcctttttctcagaggtatcacgatattttggagaagaggaagaccctccccgtctgg
caccagaaggaggagttcttgcaggttttgaaggataaccagactctcattctcgttggt
gaaactggtagtggaaaaaccactcagattcctcagtttgtgttggaagctgtggatatt
gaaagccctgataaacgtaggaagatgatgattgcgtgcactcagcctcggagagtggct
gcgatgtctgtttccaggcgtgtggctgaggaaatggacgtgaatattggagaagaggtt
ggttacagcatcagatttgaggattgcagtagcgccagaacagttttgaagtatctcaca
gatggtatgcttttgagagaagcaatgacggacccccttttggaacgatacaaagtaatt
attcttgacgaggcacatgagaggactttggctaccgatgtgctgtttggtcttcttaag
gaagtgcttagaaatagacctgacatgaagttggttgttatgagtgcaactcttgaagct
gaaaagttccagggctactttagtggggcccctcttatgaaggttcctggaagactacat
ccggtggaaatcttctatactcaggagccagagagggattacttggaggctgctattagg
actgtggtgcagatacacaaggatgaacctcctggagatatacttgtttttctcactgga
gaggaagagattgaggatgcatgccgcaaaatttcgaaagaaatatcaaatttgggagac
caggtgggtcctgtgaaagcagttcccttgtattctacccttcctcctgctatgcaacag
aagatttttgagccagctccacctccactaaaggagggagggcaacctgggaggaagatt
gtaatatcaacaaatatagcagaaacttcgttgacaattgatggtatagtctatgttatt
gaccctggatttgctaagcagaaggtttataaccctcgagtccgtgtcgagtctttgttg
gtatctccaatatcaaaggctagtgcccatcagagatctgggcgtgctggaagaactcag
ccagggaaatgttttagactttatactgaaagaagtttcaataatgatcttcagccacag
acctaccctgaaatcttgagatctaatctagccaacactgttcttaccttaaagaaactt
ggtatagacgatttagtgcattttgatttcatggaccctcctgccccagagaccttaatg
cgtgcactggaagtgttgaattacttgggtgctctggatgatgatggcaacttaactaag
ctgggtgagattatgagtgaatttccactggaccctcagatgtcgaagatgctcgttgtt
agtcctgaattcaactgttcaaatgagattctttctgtttctgccatgctatcagtaccc
aattgctttgtccggcctagggaggcacagaaagctgcggatgaagcaaaagctaggttt
ggacacattgatggagatcacctcacgctcttgaatgtataccatgcgtacaagcaaaat
aacgaggacccttcttggtgctacgataacttcgttaatcacagggcgttgaaagcagcc
gataatgttagacaacaactagtgcgaatcatggctcggtttaacctgaagttatgcagc
actgattttaatagccgtgactactatgtcaacataagaaaggcaatgctagcgggatat
ttcatgcaggtggctcatctggagcggacaggacattacctgacggtgaaagacaaccag
gtggtgcacttgcatccatcaaattgcctggaccacaagccggactgggtaatttataat
gaatatgttcttaccagtcggaattttattcgaactgtcacagatatacgtggagaatgg
ttggtggatatagccccacattactatgatctatcgaattttccacaatgtgaagcgaag
cgtgttcttgaaaagctgtacaagaagcgagagaaggaaaaagaggaagccagaagtcgt
aagtga
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