Vigna angularis (adzuki bean): 108327892
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Entry
108327892 CDS
T04660
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108327892
09123 Folding, sorting and degradation
03018 RNA degradation
108327892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108327892
03041 Spliceosome [BR:
var03041
]
108327892
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108327892
mRNA degradation factors
5'-3' decay
Lsm complex
108327892
Spliceosome [BR:
var03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108327892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
108327892
NCBI-ProteinID:
XP_052729866
LinkDB
All DBs
Position
2:complement(49677751..49681159)
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AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREEGAGGRQSKGIGRGLDD
GGTKGAGGGRGKGGPSGKPGGNRGRGRG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctctcccttctcaaaactgcccaaggccacccaatgttggtagaactgaaa
aatggagagacttataacggccatttggttaattgcgatacatggatgaacatccatctc
cgagaagtcatttgcacgtctaaagatggagatagattttggaggatgcctgaatgctac
atacgaggcaatacaatcaagtaccttcgagttcctgatgaggttattgacaaagttcaa
gaagaaaccaaaacccgagcagatcgtaaaccacctggtgtggggcgtgggaggggaaga
ggcagagaagaaggtgctggtggacgtcaatcaaaaggaattgggcgtggtcttgatgat
ggtggtaccaagggagctggaggaggtcgaggcaagggtggccctagcggaaagcctggt
ggaaatagagggcgaggtagagggtga
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