Vigna angularis (adzuki bean): 108328967
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Entry
108328967 CDS
T04660
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108328967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108328967
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
108328967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
108328967
NCBI-ProteinID:
XP_017418391
UniProt:
A0A8T0L0X5
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All DBs
Position
2:34643653..34678569
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AA seq
690 aa
AA seq
DB search
MDFDQHLTELSASSPCIPSGEDFHFYYKFTEFRRPIEEIARRTQSMLNRIGSAENIWGRG
SAFPADVDDAYEWLVNANDDVFELVDELVDELRRIMKEEGVEFENELEEKTKVPFHIPTI
KKPQYAYNIVVDNANQPFEHVLLEKSEDGQRFIHPLEKFSVLDFVDKENIEDILPIKSLS
IECTPFKLVEEVKGLKELAATLSTVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDT
LKVRNHVGPYLREVFKDPTKKKVMHGADRDILWLQRDFGIYVCNMFDTGQASRVLKMERY
SLQHLLQHFCGITANKEYQNADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFTLSKE
SEGCDNPLLEVYKRSYDICKQLYEKDLLTENSFLHLYGLRRAGFNAQQLAVVSGLWEWRD
DLARADDEGPGYVLPNKIILEIAKQMPVIISNLRRIVGRSKLPYVERSLDVIVNIVRHSM
QNAAAFEEAALRLKEEHAASLSNVVPIKDGTEVPQTQNLKIGGAATESIGVENDTCIDIS
ENCFSPDMEEECFQHEDKDGQGKVIALSTAKGNGEVLKLPTGAIDAPLLGYPMSEWKPRP
NKKVKEEIKLEQIEPSDNLPSLFVLDNSEKLKLASEKSDPQKKPVSGSVSTCSPVGVVTV
MSDSDSEDTPQLKNSNNYPGKNSLVPRKRR
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggacttcgatcaacacctaacggagctttccgcttcttcgccatgcattccctctggc
gaggacttccatttctactacaaattcacggagttccgacgcccgatagaagaaatcgcg
cggaggacacagtcgatgctcaacagaattggttccgcagagaatatttggggcagaggc
tcggcatttcccgctgacgtggacgacgcgtacgagtggcttgtgaatgcgaacgacgat
gttttcgagctggttgatgagttggtggacgagttgcggaggattatgaaggaggaggga
gtggaatttgaaaacgagttggaggagaagacaaaagtgccgtttcatataccgacgatc
aagaagcctcagtatgcgtataatattgttgttgataatgcaaaccagccttttgagcat
gttttgttggagaaaagtgaagatggtcagcggtttattcatccactggagaaattctct
gttttggattttgttgataaagaaaatattgaggatattttgccaataaagtctctgtca
atagaatgcacccctttcaagcttgtagaggaagtcaaaggattgaaggagttggctgct
acgctgtctacagttaatgaatttgcggtggatttggaacataatcattatcggtcattc
caaggtttgacttgcttaatgcaaatctcaaccaggactgaagattttgttatagacact
ttgaaggttcgtaatcatgttggaccatacctgagggaagtcttcaaggaccctaccaag
aagaaggtcatgcatggagctgatcgtgatattttgtggctgcaacgggattttggcatt
tatgtctgtaatatgtttgatactggccaggcttctagagtgttaaaaatggagagatac
agtttgcaacatcttttgcaacacttctgtgggattactgcaaacaaggaataccagaat
gcagattggagattacgccctcttcctgatgtgatgctgagatatggcagagaggataca
cactatctgctctatatatatgatttaatgaggatcaaattgtttacattgtctaaggag
tctgaaggttgtgataatcctctactggaggtttataagcgcagttatgatatctgcaag
cagttatatgagaaggacctgctgacagaaaactcgttccttcatttatatgggttgcga
agggctggttttaatgctcagcagcttgctgttgtttcagggctctgggaatggcgtgat
gatcttgcacgtgcagatgatgaggggcctggttatgtattgccaaataaaattattctt
gaaattgctaagcagatgcctgtcattataagcaatttacggagaatagtaggaaggtca
aagctcccatatgttgagcgcagccttgatgtcattgttaacattgtcagacattctatg
caaaatgctgctgcctttgaagaggctgcactacgtttgaaggaagaacatgcggcaagt
ttgtcaaatgtagtacccattaaggatggaactgaagtacctcagacgcaaaacttaaag
attggaggcgcagcaacagaaagcattggagttgaaaatgacacctgtattgatatctcg
gagaattgtttttctcctgacatggaggaggaatgttttcagcatgaagataaagatgga
caaggaaaagttattgcactctctacagcgaagggcaatggagaggtgctaaaactgcct
actggagctattgatgctccacttctgggctatccaatgtcagaatggaagccacgtccc
aacaaaaaggtcaaggaggagatcaagctagaacagattgaaccatcggacaatcttcca
tccctttttgttttggacaatagtgagaagctaaaactagcatctgaaaaatcagaccca
cagaagaaacccgtttcaggttcagtttctacctgctcccctgttggggttgtaacggta
atgtctgattcagactcggaggatacgccgcagctaaagaactccaacaactacccagga
aaaaattctcttgtgcccaggaaaagaagataa
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