Vigna angularis (adzuki bean): 108329223
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Entry
108329223 CDS
T04660
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108329223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108329223
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108329223
Spliceosome [BR:
var03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108329223
Complex B
108329223
Complex C
U2 SnRNP specific factors
108329223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108329223
NCBI-ProteinID:
XP_017418831
LinkDB
All DBs
Position
2:complement(49124532..49128506)
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AA seq
766 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNNDE
GNKNSNDDDEIDPLDAFMEGIHEEMKAAPPPKPKEKAEDRYRDDDDDPMESFLKAKKDLG
LTLASEALHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVIDKKKIEPIPALDHSSIDYE
PFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQ
GYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVI
CAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDML
KMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLARE
ILTDPIRVTVGEVGMANEDITQVVCVIPSDTEKLSWLLEKLPEMIDQGDTLVFASKKATV
DEIESQLAQIGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVV
NFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMD
LAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNPAPTR
SAAVNSLRTGMMSQFRNNFVAASSNSQNQAFGNNTSMAANKRPALPGFVSGGSIGGDVNT
YQHTASPSPASSAVNSSTQGSGVNSGQKSMNSSKPKERRRPSGWDR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagttcggattcgaaggcttcggcataaaccgccaatccacctacagc
ttcgagcgatcccaggcccctcagcgactctacgtccctccctcctcccgtcacggccac
gacaactacgaggacaccgacctcgacaacattgactacgacgacaacaacaacgacgaa
ggaaacaagaacagcaacgatgacgacgaaattgaccctctcgacgccttcatggagggg
attcatgaggagatgaaggcggcgccgccgcccaagccgaaggagaaggctgaggaccgg
taccgggacgacgacgacgatcccatggagagctttttgaaggcaaagaaggatttaggg
ctgactctcgcgtccgaggcgctgcacgctgggtacgattctgatgaggaggtttatgct
gctgccaaagccgtggacgctggtttgatcgagtatgattccgacgataaccctattgtt
attgacaagaagaaaattgagcccattcctgctctcgatcactcttccattgattacgaa
cccttcaataaggatttttatgaagagacaccttcaatatcaggtatgagtgagcaggac
gtaagcgaataccggaagagtttggctattcgtgtatctggttttgatgttcccaagcca
ataaaggctttcgaggactgtggatttccgtctcagattatgaatgctataaaaaaacaa
gggtacgagaagccgacatccatacaatgtcaggctttgccggttgtgctttccggcagg
gatattattggtatagccaaaactggttctggtaaaacggcttcttttgtgcttcctatg
attgtgcatatcatggatcagcctgagcttcagaaggaagaggggcctataggggtgata
tgtgcacctaccagagaattggctcatcagatatacctggaggccaagaaatttgcaaaa
gcgtatggggtacgtgtatctgctgtctatggtggaatgtcaaagcttgaacagttcaaa
gaactcaaagctggatgtgagatagttgttgctacccctggcagattgatagacatgctg
aaaatgaaggcattgacgatgacgagagcaacttacctggtgcttgatgaggcggatcgg
atgtttgatctggggtttgaacctcaagtaaggtccattgttgggcagattaggccagac
cgtcaaacattactcttttctgcaacaatgcctcgtaaagttgaaaagttggccagggaa
atccttactgatcctatcagagtaactgttggagaggtggggatggcaaatgaagatatt
actcaagttgtttgtgtgattccttctgatactgaaaagttgtcttggcttctggaaaag
ctacctgaaatgattgatcaaggtgatactctagtttttgcttcaaagaaggccactgtg
gatgaaatagaatcgcagttggctcaaataggctttaaagttgctgccctgcatggtgat
aaagatcaagcttctcggatggatattttgcagaagtttaaatccggtctctaccatgtg
ctcattgcaactgatgttgcagcccggggtcttgacatcaagtcaattaagtcagtggta
aactttgatattgcaaaggatatggacatgcatgtccatcgcattggtagaacaggtcgt
gctggtgacaaggatggggttgcgtacactcttataactcagaaagaagcgcgatttgct
ggtgaattggtcaatagcttagttgctgctggtcagaatgtgtccgtggagttgatggat
cttgcgatgaaggatgggagattcaggtcgaaacgtgatgcaagaaaaggaggtgggaaa
aaaggcagaggtagaggtggtggcggaggtggccgtggtgtgcgtggagtggattttggc
ttgggcattggatataatcccgaatctaacaacgcaccatctaacccagctcctactcga
tctgccgcagtaaattctctgcggactggaatgatgtcacaatttagaaacaactttgtt
gctgcttcgtcgaactctcagaatcaagcattcggtaacaatacaagcatggctgctaat
aagagaccggcactccctggttttgtatctggtggatcaattggtggtgacgtgaatacg
tatcagcacactgcttcacccagtcctgcttcttcagcggtaaattccagcactcaaggt
tctggagtaaattctggtcagaagagcatgaatagttctaaacccaaagagaggcggagg
ccatcaggttgggatagatag
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