Vigna angularis (adzuki bean): 108329252
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Entry
108329252 CDS
T04660
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108329252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
var03021
]
108329252
03019 Messenger RNA biogenesis [BR:
var03019
]
108329252
Transcription machinery [BR:
var03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108329252
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108329252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-met
Motif
Other DBs
NCBI-GeneID:
108329252
NCBI-ProteinID:
XP_017418875
UniProt:
A0A8T0L3K5
LinkDB
All DBs
Position
2:45075213..45081368
Genome browser
AA seq
1019 aa
AA seq
DB search
MNMDSTRRSLDRSRDLGSKKPRLIDELSARQLPQRQQGSGIVTSLVSARARVNDRDTESS
ESSRGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANI
LEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTW
KGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQS
STSKGVVDDMTGALLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVSEKS
IDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKR
SLSNREAPKSINLKAHREPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVS
SNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHT
IDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETES
PSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEKPQDHKTSQFLGGPTGQHIRDRSPTLHPV
VQVGNMRRTQEKDMQGTFQPKLQPLQPDSAQAEVFAKTKLPQSKVSLTKGVSEQSTKNNL
SAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLTSSGSAVVSPALLDPLH
KDSSSLPKKPQGKVGQPPQRLNTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETES
PTVVPSEVLKGSKDKTANISTNSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQSTS
TKIRNLIGFDFKPNVIREFHEPVIRELLDDFSHHCKICSIRFKQEQQYKRHLEWHATREH
DPIKVSRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLCVL
CGELFEDVYCHERNEWMFKGAVYMNCSDVNDEMESRNVGPIIHAKCLSENSIVTNLGND
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggacagtacgcgcagatcgttggatagatctagagacctgggttccaagaag
cctcgattgatcgacgaactcagcgctagacagttacctcaaagacagcaagggtccggg
atagttacttccttggtgtctgcaagggctcgagtaaatgacagggacaccgaaagcagc
gaatcaagtcgcgggtaccagcctcagccacagcctcaccatgagcttgtgactcagtat
aagactgcgcttgctgaacttactttcaattccaagcccataattacaaacttgactatt
attgctggggagaatcagtctgctgccaaggcaattgccgccactgtctgtgctaacatt
ctagaggttccaagtgatcaaaaactgccgtctctttatctcttagacagtattgttaag
aacatcgggcgagattatataaagtattttgctgtcagattacctgaggtattctgcaag
gcttacagacaggttgatcctattgtccattcaagtatgaaacatctttttggaacttgg
aaaggagtctttcctcctcagtgccttcagatgattgagaaagaacttggctttacacct
gcagtcaatggttcagcttcagtatctgctacagtcaggagtgatttgcagtcacaacgc
ccacctcatagtatccatgtgaatccaaagtatttagaaaggcagcgtctccagcagtca
agtacgagtaaaggagttgttgatgacatgaccggagctttgttaaagtcaaatgaggat
tcagagaggccaaatagagctttgggtgcttctcgaccatggctggatcctaggattaac
atgcttaataatcagcacacacagagagatgcatttaatgattctgtttctgagaagagc
attgatggatcatttggaggcagtcaatatggttctggcatttctagtaatttggtctca
ggtgctggaagaactggaactaagctcattgatttagggcaagaaaaaacatggtccaaa
acagatggtggtgatgcagagaccatatctgggcaaaaaaatggtttcagtctcaagcgt
agtctttcaaatcgtgaagcaccaaagtccataaatttgaaagcacatcgtgagccaggc
ctaaatttaactcagatatggaacaatatgatgtcagataactggaaaaattctgaagag
gaggagttcacgtgggatgagatgaactctggtttgactgatcatggacctaatgtgtct
agcaatttgagcacagattcatggatgacagatgatgaaaatttggaaggtgaagatcac
ctgcatattctacacccttacggggaaaaggttgatagggaaatatccactgttaagaaa
caactgcctggttttggtggccatccaccttcatcatggcaattgcagaagcatcacaca
attgataagttgactctgaagccaggttactcagaaggatttgtgtccactattagtggc
ttaccagccaacgcaagttctttacctgtcaagaaggggaaccaatctcttacgtcaaag
gcaatagtaggaatgtccaaaattgtagagcaacaatttgattctggggagaccgaatcc
ccttctgggcagtcaccttcacaacgacagtctccatcactaccaggaacagtataccac
cctcattcaatgcaaaatttgcctgagcaagaaaagccccaggatcacaaaacatctcaa
tttttgggaggtccaactggtcagcacattagagatcgctcacctacccttcatcccgtc
gttcaggttggtaacatgcgaagaacacaggaaaaggacatgcagggcacgtttcaacca
aagcttcagccactgcagcccgactctgctcaggctgaagtttttgctaaaactaagctg
ccccagtctaaagtttctttaaccaaaggagtttcagaacagtcgaccaaaaataatttg
tcagctgcagctgtgaagagtggaatcattcccaagaaatcaattaccagtaatctggat
ccaaggaagcatctatccaagtctggggttcagcttcctccttctggtaggtcttctcct
gccacattaacttcttcagggtctgcagtggtatcaccagctttattggatcctctgcac
aaagattcatcttcactacccaaaaaacctcaaggaaaggttggacaaccaccacaaagg
cttaatactcaaccacctgcttcctctaatgtgaatgctgcaaaaaataatgtaaaccct
atcgcaaaccttttaagctcattggttgcaaagggtttgatatctgcagaaactgaatca
ccgactgtggtaccaagcgaggtgctgaagggatccaaagataaaactgcaaacatcagc
accaatagttctttcccagttacatcagtttctgattctgcagctgtcccagcatcatct
gccagagatgaggaagacgcttctacaaaatcctctctaccctcagctcaatcaactagc
acgaaaatcagaaatctcattggctttgattttaaacctaatgtaattcgagaattccat
gaaccggtaattagggaattattggatgatttctctcatcattgcaaaatttgcagtatt
aggtttaaacaagaacagcagtataagagacacttggagtggcatgccacaagagaacat
gatccaattaaagtatccagaagttggtatgctaagtcaagtgattggattgctggcaag
gtagaatactcatctgagcttgagtttaccgactctgttgttgtacacgacaaagaaaca
gacagcagtcaattggatacgatgattcgagcagatgaaaatcagtgtttgtgtgtactg
tgtggcgagctatttgaagatgtgtactgtcacgaaaggaacgagtggatgttcaaaggg
gctgtttacatgaactgctcggatgtcaatgatgagatggaaagtagaaatgtgggtccc
atcattcatgccaaatgcctatcagagaattcaatcgtcaccaatttgggtaatgattaa
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