Vigna angularis (adzuki bean): 108331657
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Entry
108331657 CDS
T04660
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03013
Nucleocytoplasmic transport
var03015
mRNA surveillance pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108331657
09122 Translation
03013 Nucleocytoplasmic transport
108331657
03015 mRNA surveillance pathway
108331657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108331657
03041 Spliceosome [BR:
var03041
]
108331657
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108331657
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108331657
Spliceosome [BR:
var03041
]
Complex C
Other components
EJC/TREX
108331657
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108331657
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
108331657
NCBI-ProteinID:
XP_017421989
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All DBs
Position
4:complement(36274924..36281284)
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AA seq
427 aa
AA seq
DB search
MGETKDEAYEEELIDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccaaggacgaagcatacgaggaagagcttattgactacgaggaggaagaa
gacaaggctcccgactccgtcggagctaaagtcaacggcgaagctaccaagaagggctat
gttggaattcacagttcaggattcagagactttcttctgaagccagagctacttcgggct
attgtggactcgggatttgagcatccttctgaagtgcaacatgagtgcatccctcaagca
attctaggaatggatgtgatttgccaagcgaaatctggaatgggaaagactgctgtcttt
gttctctcgactctgcagcagattgatcccgttcctggccaagtttctgctcttgttctg
tgccatactagagaattagcataccagatatgccatgagtttgagaggttcagtacctat
ttacccgatctcaaggttgctgtcttttatggtggggtcaacatcaaagttcacaaggat
ctgctgaaaaatgagtgccctcatattgttgttggaacacctggaagaatactagcattg
actagggataaggatctttctttgaagaatgtgagacatttcatattagacgaatgtgac
aagatgctggaatcactggatatgaggaaagatgttcaagacattttcaagatgactccc
catgataagcaagttatgatgttttccgcaacactcagcaaggaaattcgcccagtctgc
aagaaatttatgcaagatcctatggaaatttatgttgatgatgaggcgaagttgacactt
cacggacttgtgcagcactacatcaaactgaaagaagaggagaaaaaccggaagttgaat
gatcttcttgatgcactggactttaatcaagttgttatctttgttaaaagtgttagtaga
gcagccgagctggacaaactactcgtggagtgcaactttccttctatatgcatccactct
ggcatgtcccaggaagaaaggttaaagcgttataaaggtttcaaagaagggcatacaaga
attcttgtcgcaacggatttggttggaagagggattgacattgaacgtgtcaacattgtt
ataaactatgacatgcctgattctgcagacacgtacttgcacagggttggtcgagctgga
agatttggcaccaaaggccttgcaattacatttgtttcctgttctaccgatgttgatgtt
ctcaacaatgttcaatcaaggtttgaggtggatataaaacagctgccagagcagattgat
acctcaacttatatgccgtcctag
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