Vigna angularis (adzuki bean): 108336320
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Entry
108336320 CDS
T04660
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03013
Nucleocytoplasmic transport
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108336320
09122 Translation
03013 Nucleocytoplasmic transport
108336320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108336320
03041 Spliceosome [BR:
var03041
]
108336320
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108336320
Spliceosome [BR:
var03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108336320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
108336320
NCBI-ProteinID:
XP_017428224
LinkDB
All DBs
Position
7:15447098..15450504
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AA seq
502 aa
AA seq
DB search
MEDGETTEEVVAVPVSNSEGVGDEQMFPHSPRQRDSDEESPQKSLRKTKASIENIVAEIL
ALKKQAEPKPLLTLRLRELLTQTFLHFVTLRQANRSILLEEERARTETERAKAPLELTTQ
QLQNLIYEKSHYVKAIKACNDFKSKYPDIELVSEGEFFRDSPQGMKDSVLCSHSEHNLVL
KRLNFELFQRKELCKLHDKLEQKKKTLLETIANRKKFLSSLPSHLKSLKKASLPVQNQLG
VQHTKKLKRHHSAELLPPPLYVIYSQLLAQKEAFGESIDVEIVGSVKDAQSFAHIQAHKD
TGISTTVASPKLENDEPDEDGQRPSKRPRRFQGKESLDQVGIFQVHPLTVNLHIYDDEVS
DLESANLVTLNFEYMMQLNIICVGIKASIDGPENDILSNLFPDDTGLELPHQSAMLYVGD
AVMLFNCDRTSRPYKWAQHLAGIDFLPEVAPLLLARRETPDGGEGAKGEDFVPSISQYRQ
HNRLQTVLQKIRSRIKARLVLQ
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggcgaaacgacggaggaggtggttgccgttccggtttcaaatagcgagggc
gtcggtgacgagcaaatgtttccgcattcccctcgacaacgcgattcggacgaggagtct
ccgcaaaaatcgttgcgtaaaacgaaagcttcaatagaaaacatcgtcgccgagattctc
gctctgaagaaacaggccgaacccaaaccactcctcactctccgactcagagagctcctc
actcaaacgttccttcatttcgtcactcttcgccaggccaatcgctccatcttgttggag
gaggagcgtgcgagaacggaaactgagcgtgcgaaggcgcctctggaactcaccacgcag
cagcttcagaacctgatctacgagaagagtcactacgtgaaggcaataaaggcgtgtaac
gatttcaagtccaagtatcctgatattgagctggtgtcggagggagagttttttcgtgac
tcgccgcagggtatgaaggactccgttttgtgtagtcacagtgaacataatctcgtgctg
aagagactcaattttgagttgtttcagcgcaaggagctttgcaagcttcatgacaaactg
gagcagaaaaagaaaactcttttggagacaattgcaaaccgaaagaagttcttgtctagc
ctcccttcacatctcaagtctctcaagaaagcatccttgccagtgcaaaatcaactagga
gttcagcatactaagaaactaaagcggcatcactcagcagagttgcttccaccacctctt
tatgtgatttactcacagctgttggctcaaaaggaggcgtttggagaatctattgatgtg
gagattgtaggaagtgtcaaagatgctcaatcttttgcccacattcaagctcacaaggac
actggcatttccactactgtagcgagtccgaaattggaaaatgatgaacctgatgaagat
ggtcagagaccgagtaaaaggccaaggaggtttcaaggcaaggagagccttgaccaagta
ggaatatttcaagttcacccacttacagtcaatctccatatttatgatgacgaagtctct
gatttagagtctgcaaacctcgttactctaaattttgagtacatgatgcagttgaatatt
atatgtgtcgggatcaaagcatctattgatggtcctgagaatgacatcttaagcaatttg
ttccctgatgacacaggtctcgagcttcctcaccagtcggctatgctctatgttggggat
gctgtaatgttgtttaattgcgatagaacttcacgtccttacaaatgggctcagcacctg
gctggtattgatttcttgcccgaggtggctccattgctgcttgctagacgtgaaactcca
gacggtggtgaaggagccaaaggtgaagatttcgtaccgagcatttcacaatatcgccag
cataaccgattgcagacagttctgcagaaaattcgttcaaggataaaagcacgtttggtt
cttcaataa
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