Vigna angularis (adzuki bean): 108337974
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Entry
108337974 CDS
T04660
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108337974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108337974
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108337974
Spliceosome [BR:
var03041
]
Complex C
Other components
Step II factors
108337974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
AAA_16
TsaE
Sigma54_activ_2
ABC_tran
GIPC1_GH2
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
108337974
NCBI-ProteinID:
XP_017430057
UniProt:
A0A0L9V312
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All DBs
Position
7:complement(16850295..16859352)
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AA seq
1201 aa
AA seq
DB search
MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKETVNGKTKFKALAIADDRDRAKELRQEM
ESEAREKQSEQIEEDDGYRDRDRRDRRRDRYDEDDRRDHRRRGRDRDDEDDRRDYGRRGR
DRDRDDEDDRRDYSRRGRDKYDKDRDRDGDRYERRRRDDNEENGRGRENGDRDGNRKATR
HVSGEPELYAVYKGRVSRVMETGCFVQLEDIRGKEGLVHVSQMATRRITNAKDVIKRDQE
VYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRMNPQGSRDGPVTRTGLSGI
RIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVMSVSEYPTYDEEGDGLLYQEEGAEEE
LEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRT
MLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLS
IQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQ
PRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLS
QYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTI
PGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERM
KGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDP
GFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTI
PEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLG
RKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQ
PEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAG
KNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMT
TKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagataatcctgaggatggattgaagaagttggaatatttgtctcttgtgtcg
aaggtgtgcaccgagttggagtcccacaccggcaccggcgacaaagttctggcggagttc
atcactgagttgggtcggtcgtcggagaatgttgaggaatttgacgcgaaattgaaggag
aatggtgcggaaatgccggattactttgtccgaacgctcctcactattattcacgcgatt
ctccctcccaagccgaaggatttgaaaaaggagaaagagactgtcaacggcaagaccaag
ttcaaggctctggccatcgcagacgatagggaccgggccaaggagcttcggcaggagatg
gaatctgaggcaagggagaagcagagtgagcaaattgaggaagatgatgggtacagagac
agagatagaagagataggcgcagagataggtatgatgaagatgatagaagagatcatcgc
agaagaggaagagacagagatgatgaagatgatagaagggattacggcagaagaggtaga
gacagagatagagacgatgaagatgatagaagggattacagccgaagaggaagagataaa
tatgataaggatagagatagggatggtgacaggtatgagaggcgcaggagagatgataat
gaagagaatggtcgtggaagggagaatggagatagagatggtaataggaaggctacacgg
catgtttctggtgaacctgaattatatgccgtttacaaagggagggtgtccagggtaatg
gaaactgggtgctttgtccagttagaagacataagagggaaggaggggttggtccatgtg
tcacagatggccactcggaggatcacaaatgccaaagacgtcattaagcgcgaccaggag
gtttatgtaaaggtgatctcagtttccggtcagaagttgtctctttccatgagggacgtt
gatcagcacacaggtaaggatctccttccgttgaagaagagctccgaggacgatgccttg
aggatgaatccgcagggttcaagggatggaccggttaccaggacaggtctttcaggtatc
aggattgtagaagaagacgatgttggttcttcacggagacctctgaagagaatgagctca
ccggagagatgggaagcaaaacagttgattgcttcaggtgtgatgagtgtttcagagtat
ccaacttatgacgaggagggagatggattgctgtaccaagaggaaggagctgaggaggag
cttgagattgagttgaatgaggatgaacccgcattcttgcaagggcagagcagatactca
atggatatgtctcctgttaagatttttaagaatcctgaaggttctctgggtcgagctgct
gcacttcagtctgcacttataaaggagcgtagggaagtgcgagaacagcaacaacggaca
atgcttgattcaattccaaaggatctgaatcggccttgggaagaccctatgccagagtca
ggtgaaaggcatcttgcccaggagcttaggggtgttggtttatcagcctatgatatgcca
gaatggaagaaggatgcatatgggaaaacaattacctttgggcaaaggtcgaagctttct
attcaagaacagaggcagagtttgccaatttacaagttaaaaaaagaattgattcaggct
gtgcatgataatcaggtgttggttgttattggagaaactggttcgggtaagactactcag
gtcacacagtatcttgccgaagcaggttataccacaaaaggaaaaattggatgtactcaa
cctcgtagggtggctgcaatgtctgttgcaaagagagtagcagaagagtttggttgtaga
ttgggagaagaagttggttatgccattcggtttgaggattgcactggaccagatactgtt
atcaagtacatgacagatggtatgcttcttagggaaatattggtcgatgagaatctgtca
cagtattctgttataatgcttgacgaagcccatgaaagaactattcatactgatgttctt
tttggactgctcaagcagctagtgaagcgaagacccgaattgcgattgattgtcacttct
gctactctggacgctgagaaattttcaggatatttctttaactgtaacatctttacaatt
cctggtagaacttttcctgttgagatactttatactaaacagccggaaagtgattattta
gatgcatctttaataactgtcctacagatacacttgactgagcccgagggagacattctt
ctctttttgactgggcaagaggagattgattttgcttgccaatctctatacgagagaatg
aagggattaggtaagaatgttccagagctgatcattttaccggtttatagtgcccttcct
agtgaaatgcagtctaggatatttgatcctgctcctccagggaaaaggaaagtggtcgtg
gctactaacattgctgaggcttctttgactattgatgggatattttatgtaattgatcct
ggatttgctaagcaaaatgtttataacccaaagcaaggtcttgattctttggtaataact
ccaatttcacaagcatcagccaaacaaagagctggacgtgcagggcgtactggacctggg
aagtgttatcgcctttataccgagagtgcatacaggaatgagatgtctcccactacaatt
cctgagattcaaaggataaatctggggatgactacacttaatatgaaagcaatggggata
aatgatctactgtcctttgattttatggatccaccatcacctcaagcactgatttctgcc
atggagcagctttacagtcttggagcattggatgaagagggccttctgaccaaattgggg
aggaaaatggcagaatttcctttggatccacctttgtccaagatgttgcttgccagcgtc
gaccttggatgcagtgatgagattttgaccataattgccatgatccagactggtaatatt
ttctacaggccaagggaaaagcaagcccaagcagatcagaagagggcaaagtttttccag
ccagagggtgatcatctgacactacttgctgtttatgaggcttggaaagccaagaatttt
tctgggccctggtgttttgagaattttgtgcaatctagatcgttgagaagagcacaggat
gtcaggaaacaactgctcaccattatggataagtacaaattggatgttgtaagtgctgga
aaaaacttcaccaaagtaaggaaggctatcactgctggattcttttttcacgctgccaga
aaggatccccaggaaggatacagaactctagttgagaaccaacctgtgtatatccatcca
agttctgctttgttccagaggcagccagactgggtcatataccatgagcttgtgatgaca
actaaggagtatatgcgtgaggtcactgtcatagaccccaaatggcttgttgagctggct
ccaagatttttcaaagtagcagatcctacaaagatgagcaagcggaagcgtcaagagcga
attgagccactttatgatagataccacgagccaaattcatggcgtttgagtaaacgtcgt
gcatga
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