Vigna angularis (adzuki bean): 108338059
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Entry
108338059 CDS
T04660
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
var
Vigna angularis (adzuki bean)
Brite
KEGG Orthology (KO) [BR:
var00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
var03009
]
108338059
04121 Ubiquitin system [BR:
var04121
]
108338059
Enzymes [BR:
var01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108338059
Ribosome biogenesis [BR:
var03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108338059
Ubiquitin system [BR:
var04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108338059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
zf-ANAPC11
MMS19_N
FANCL_C
zf-C3HC4_2
zf-C3HC4
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
108338059
NCBI-ProteinID:
XP_017430216
LinkDB
All DBs
Position
7:28847894..28867261
Genome browser
AA seq
1885 aa
AA seq
DB search
MGKQKGENARSKSRPSSSSLAASLLPSGPAAAAAVGFGGFVGSSRLDLPSSSEDSLPFVD
VDSELAVHLKRLGRKDPTTKLKALAALSMLLQEKSAKESILIVPQWAFEYKRLLLDYNRE
VRRATHDTMTALVTSVGRDLALHLKTLMGPWWFAQFDPVSEVSQAAKRSFQAAFPAQEKR
LDALILCTTQIFMYLEENLKLTPQNLSDKAVATDELDEIYQQVISSTLLALATLLDVLIC
LQQGPGFENVTTEPKHASKARVAAVSFTEKLFKDHKYFHDFLRSQRPSIRSATYSVLKSL
IKNMPQAINDGNLKTVAGAILGAFNEKDPTCHPSMWDVILLFSRKFPDGWSSLNIQKSIL
NPFWNFLRNGCFGSQKVSYPALVLFLDNVPPTSVRGDKFFLEFFKNLWAGRRVSLSTDRL
AFFQALQECFLWSLKNASRYNDGEESICHFRVTLVDHVLVKLFWKDFLTAGTSRADDIIN
AGKATFSSEENVSENEKVDMLSMKYPMPYLQELGNCFIEILLGIYILDINVLSVFIEELQ
VNCMGALEQAVNVDIVERIILFMFLLEKHAVLKGAIWPLAYIVGPMLAKSFSLIKSSDSP
DTVRLLTVAISVFGPQMIVQEVFIKNKGHYSSQVSCNGDKLGEAEDFMQIFKNIFVPWCL
QSNSCSTSALLDLLLALLDDEYFSEQWSFIVNYVIGQSYSEFESRLLDADHAAILAMLLE
KARDGRMKRKVEDDSSHSPGSNAKDWHHQYLESSAIAISQSLPPFSTSHVQFICSLLGGL
TEEKSSFLSRNALILIYEEIFRKLLCFLQASPFFWVQNAASVLINDEKIPVEFDSSLNIV
EIAQFSLEILDGSFYSLKTLDGESGLVSGILSAIFVIEWECNLSKALGYSLDDNSMIQIK
PRITFGELVCAFHNNINVQFLKSLCSDSRKRLSNILVQSTRLALFAEDRLINDEIVSLCC
TWVLEVLEHVCVDENEEQSLLQYLLSKDEMWPAFVTPNFSLTKASGDKKFVALIDKLISK
IGIDRVISGCGVLNPSLLGKGQELASSAWLGAEILCTWRWPGSCAMSSFLPSFCAYAKGN
NYVQEGLLDETLRILLDGSLVYGGTGTKSSVSMWPVPADEMEGVEEPFLRALISFLSALF
KEKIWGPAKASSLIELFVNKLFIGEAVNTNCLKILPLLINILLEPFYGYEEPGTGVHHCS
LEERFVQNTMIDWLERALSLPPLVTWKTGEDMEDWLQLVIACYPFISVSGPQALKSARSI
SSDERKLLCKLFQKQRHVAGGSAIFNQLTVVQMLLSKLMIVSVGYCWNEFCKEDWDFLLS
NLRCWIQSAVVMMEDITENINGVVDSSADNLNLMSQKIEQIILISDPFPIKICENALFSF
LLLLKHCKLQQDEERDNLRTFKSENLDSVKDRILEGVLRLLFCTGISEAIASACCKEAAL
VVASSRVEYTHFWNLVSFGVVNSSSQCRDKAVKSVEFWGLRKGSISSLYALLFTSKPIPP
LQFAAYFVLSNEPVLSIAILEDNACNSNVYAATDVDVRGHDMSIEEKVHLKKEISVMVER
APFEVLGTESLSHQRVNLFLAWSLLLSHLQSLSSSSQRERLIQYIQDSATPVVLDCLFQH
IPVETFTVQSLKKKDAELSGGLSEAASAATRATTTGSLLFAVESLWPVESEKISSLAGAI
YGLMLQVLPAYVRGWFSDLRDRNTSAVIESFTRTCCSPPLIANELSQIKKADFRDENFSV
SVSKSANEIVATYTKDETGMDLVIRLPASYPLRPVDVDCTRSLGIAETKQRKWLMSMMLF
VRNQNGALAEAIGIWKRNFDKEFEGVEECPICYSVIHTADHSLPRLGCKTCKHKFHSACL
CKWFSTSHKSSCPLCQSPFYGLHLE
NT seq
5658 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcagaaaggagaaaacgccagaagcaagtcacgcccttccagtagcagtctc
gccgcctcgctcttgccttccggccccgccgccgctgccgccgtcggattcggtggtttt
gtcggcagctcgcgccttgatcttccttcttcgtccgaggactccctcccctttgtcgat
gttgatagtgagcttgcggttcacttgaagaggctaggcaggaaggatcccaccactaag
cttaaggcattggcagctctatctatgctgcttcaagaaaagtctgcaaaagaaagcatt
ctaatagttccgcaatgggcatttgagtataaaaggcttttgctggactacaatagggag
gttcggcgggccactcatgataccatgaccgctcttgttacttctgttgggagagattta
gctctgcatttgaagactttgatgggaccatggtggtttgctcaatttgatccagtttct
gaagtttctcaggcagcaaaaaggtctttccaggcagcctttccagcacaggaaaagaga
cttgatgctttgattttatgcacaacacaaatatttatgtatttagaagaaaacctaaag
ctcacaccgcaaaatttatctgataaagctgtagctacagatgagttagatgagatatat
cagcaggtgatatcatcaacgttgttagcattggccactcttcttgatgttttaatttgc
ttacaacaaggacctggttttgagaacgtaactactgaacctaaacatgcttctaaggct
agggtggctgctgtttcttttactgagaagctgttcaaagatcataaatactttcatgac
tttttgaggtcacaaaggcctagcattcgatcagctacttatagtgtattgaagagctta
ataaaaaatatgccacaggctattaatgatggaaatttaaaaactgttgctggtgcaatt
cttggtgctttcaatgagaaggatccaacttgtcatccctcaatgtgggatgtaatatta
cttttctctagaaaattcccggatggttggtcttccttaaacattcaaaaaagcatacta
aatccattttggaattttcttaggaatggttgttttggttcccagaaggtttcatatcca
gctttggttttatttttagacaatgttccacctacatctgtcagaggggataagtttttt
cttgaatttttcaagaacttgtgggctggaaggagagtttctctatctacagatagactg
gcatttttccaggcactgcaagaatgtttcctttggtctttgaaaaatgcttcaagatat
aatgatggagaagagtcaatctgtcatttccgagtcactcttgttgatcatgtccttgta
aagcttttttggaaggatttccttacagctggaacctcgagagccgatgacataatcaac
gcaggaaaagcaacattttcatcggaggaaaatgtttctgaaaacgagaaagtggatatg
ctgagtatgaagtatcctatgccctatttgcaagagttggggaactgctttattgaaatc
cttttaggcatttatatattggatatcaatgttctatctgtttttattgaggaacttcag
gttaattgcatgggtgctcttgagcaagcagttaatgtggacattgttgaacgaatcatt
ttgttcatgtttttgctggaaaaacatgctgtgctgaaaggtgcaatttggccattggcc
tatattgtgggaccaatgttggcgaagtctttctcactcattaaatcttcagattcacca
gatactgtgagacttctgacagttgctatttcagtatttggaccacaaatgattgtccaa
gaagtttttattaaaaacaaagggcattactctagtcaggtttcgtgtaatggggataaa
ttaggggaagctgaagactttatgcaaatattcaagaatatatttgttccttggtgcctg
caatcaaatagttgctcaaccagtgctctgctagatttgttgttggcactgctggatgat
gagtatttctcagaacaatggtccttcatcgtcaactatgtgattggccaaagttattct
gagtttgaatcaaggttattagatgctgaccatgcggcaatattggctatgctcctagaa
aaagcaagggatgggagaatgaagaggaaagtggaagatgattccagtcatagtccaggc
agcaatgccaaagattggcatcatcaatatctcgaatcatctgctattgctatttctcaa
tccctgccgcccttcagcacttctcatgtgcagtttatatgctctcttctcggtggttta
acagaagaaaaatcttcttttttgtcaagaaatgctttgattctcatttatgaagagatt
ttcaggaagttactatgttttctccaggcttcacctttcttttgggtacagaatgcagct
tctgttttaatcaatgatgaaaaaatccctgtagaatttgatagttctctcaacattgtt
gagatagctcaattttctcttgagatacttgatggtagtttctatagcctgaagactctt
gatggggaaagtggacttgtatctggaattttatctgcaatttttgtcattgaatgggag
tgtaatttaagcaaagcactaggttattcacttgatgacaattcaatgatacaaatcaag
cccaggataacatttggtgaattagtgtgtgctttccataacaatataaatgttcaattt
ttgaaaagcctttgctcagatagccgcaagagattgtcaaatatcttagttcagtcaaca
aggttagcgctatttgccgaagacagacttattaatgatgaaattgtatcgttatgctgt
acatgggttcttgaagttcttgaacatgtctgtgtggatgaaaatgaagaacaaagtctg
ctacaatatctactgagtaaggatgaaatgtggcctgcgtttgttactccaaattttagc
ttgacaaaggcttctggagacaagaagtttgttgctttaattgacaagttaatatcaaaa
atagggattgatagagttatttctgggtgtggtgttcttaatccatctttgcttggaaaa
ggtcaagagcttgcatcttctgcatggttaggtgctgaaatcctgtgcacgtggagatgg
cctggaagctgtgctatgtcttctttcttaccttcattctgtgcttatgccaagggcaat
aattatgtccaggaaggcctgttagatgaaacgttgagaattttgcttgatggttccctt
gtttatggaggcactggcacaaagagttccgttagtatgtggccagttccagctgatgaa
atggaaggtgttgaagaaccattcttaagagcacttatttcgtttctctctgctttattc
aaagagaaaatatggggcccagcaaaggcatccagtctgatagaactttttgtgaataaa
ctctttattggggaagcagttaatactaattgtcttaagattctacctttgcttataaat
atacttctagaaccattttatgggtatgaggaacctggtactggtgtccatcattgttct
ttagaagaaagattcgtgcaaaatactatgatagactggctggagagggcactaagtctt
ccacctttggtcacatggaagacaggagaagacatggaagattggcttcagttggttatt
gcctgttatcccttcatctcagtgtctggtccacaagcattgaagtcagcgagaagtatc
agctctgatgagaggaagcttctctgtaaattattccagaagcaaagacatgttgctggt
ggatcagctatatttaatcagcttacagtggtgcagatgcttctatcaaaacttatgatt
gtttctgtaggatattgctggaatgaattctgtaaagaagattgggactttttattgtct
aacctaaggtgttggattcaatcagcagttgtcatgatggaggatataactgaaaatata
aatggtgttgttgatagctcagctgataatttaaatctgatgagtcagaaaattgagcaa
attattttaatttcagatccttttccaataaagatttgtgaaaatgcccttttctctttt
ttgcttctccttaagcattgtaaacttcaacaagatgaagagagagataatctacgtaca
tttaaatcagaaaatttggattctgttaaagatcgaattctagagggtgtcctccgccta
ctattttgtactggaatttctgaggctattgcatctgcttgctgtaaagaagctgcctta
gttgttgcatcatcacgggttgaatatacacacttctggaatttggtatcttttggggtt
gttaattcctcttcacaatgtagagataaagcagtgaagtcagttgaattttggggacta
aggaaagggtctattagctctttgtatgctttactttttacttccaagccaattcctcca
ttgcagtttgctgcatattttgttctttcaaatgagcctgttttaagcattgccatcctt
gaagataatgcttgcaactcaaacgtatatgctgctactgacgttgatgtcagggggcat
gacatgtcaatagaagaaaaggtccatctgaaaaaggaaatatctgtcatggtagaaagg
gcaccttttgaggttcttggaacggagtctctttcacatcaacgcgtaaatctcttcctt
gcttggtctttgttgttatcacatctacagtcattatcttcctcgtctcaaagggagaga
ctgatccagtacatacaagactctgctactccagttgttttggattgcctttttcagcat
attcctgtagagactttcacagttcagagtctaaagaagaaagatgcagagctctctggt
ggtttgtcggaagctgcaagtgctgcaacccgtgccaccacaactggttcactcttgttt
gctgtggaatctctttggcctgttgaatcggagaaaatttcatcacttgctggtgcaata
tatggtttaatgctccaggttcttccagcttatgtacgtggctggtttagtgatttacgt
gaccgtaacacttcagctgtcattgaatcctttacaaggacttgctgcagccctcctctc
attgcaaatgaattgtctcagattaagaaagccgactttcgtgatgagaatttctcagta
agtgtaagcaaatcagcaaatgagattgttgctacttacacaaaggatgaaacgggaatg
gatctagtcattcgtctccctgcatcttatccactaaggccagtagatgttgattgtaca
aggagccttggaattgctgagaccaagcaaaggaaatggttgatgtcaatgatgctattt
gttcgtaatcagaatggggctttagcagaagctataggaatttggaagcgcaatttcgat
aaagaatttgaaggtgttgaggagtgcccgatctgttacagtgtaattcacaccgcagac
cacagtcttcctcgtcttggttgcaagacatgcaaacacaaatttcattctgcttgtctt
tgtaaatggttttctacttctcacaaatcatcatgcccactgtgtcaatctccgttctat
ggtttacaccttgagtaa
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