Vigna angularis (adzuki bean): 108338178
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Entry
108338178 CDS
T04660
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108338178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108338178
Spliceosome [BR:
var03041
]
Complex A
U1 snRNP components
U1 related factors
108338178
Complex B
108338178
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
108338178
NCBI-ProteinID:
XP_017430413
LinkDB
All DBs
Position
7:complement(14557244..14572135)
Genome browser
AA seq
999 aa
AA seq
DB search
MANNSQPSSMQFRPVIQAQQGQQFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQQM
QQLTPRPMQPGHLAPSSQPIPMPYVQTNRPMSSIPPHSQTVPPLSNHMPGLPVSGAPPHS
SYSFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWPSSASQSVAPSTSVQPAGLQSSGA
TLTDAVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWK
EFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNVVVSSIATS
TAANAASLNPSLTSNGPASSPSSVIPIASTDSQQLVSGLLGTSVSHSAVTSSTTGVEPSS
AGTTSAVPVVVTGSSGLPENSPQLSKMPPIVENQASQDFASANGSSPQNIEEAKKALAEV
GKNNVIPSEEKTIDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNA
LKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMF
ENDERYNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSH
WRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFR
KLLEEHVATGFLTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFEDVAEDLEKQYHE
DKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDAACQTISDINLKLIFEELLDRAKEKEEK
EVKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITY
LKEKAKEKERKREEEKFKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDQDMA
DVHGYKEEKKKEKEKERKHRKRHQSSIDDVDSEKEDKEESKKSRRHGSERKKSRKHANSP
ESDNENRHRRHKREHWDVSRKSGGHEELEDGELGDDVEN
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggccaataattctcagccctctagcatgcagtttcggccagtcattcaagctcagcaa
gggcaacaatttgttcctatgaattcacaacaatttggacccgcaggacatgctattcct
tcttcaaatgtgggaatgcctgtcattcaaggtcaacagttgcaatattctcaacaaatg
cagcaattgactccaagaccaatgcagcctggtcatcttgctccttcatcacaacctata
cccatgccatatgttcagacaaacagaccaatgtcatctatcccacctcattcgcaaact
gttccccctttaagcaatcatatgcctggcttacctgtttctggagcacctcctcattct
tcatattctttcacaccatcatatggtcagcagcatgataatgcaaatgcattggctcaa
taccagcatccacctcaaatgcttgctcctcctggtggtcaaccttggccgtcatctgca
tctcagagtgttgcaccttctacatctgttcagccggctgggttgcaatcatctggagct
acattgactgacgcggtaactaatgctactaaccagcaatccttatctgattggcaagag
cacacttctgcagatgggagaagatattactacaacaagaggacaaggcaatcaagttgg
gagaaacctttggaattgatgtcacctattgagagagctgatgcatcgactgtttggaaa
gaattcacttcttcagatggaaaaaagtattattacaataaggttactcaacaatcaacg
tggtcaataccagaggaacttcagttggctcgggagcaggcacaaaaagctgcaaaccag
ggaatgcagtcagaaacaagtgatacacccaatgttgttgtctcatcaattgcaacatca
acagcagctaatgcagctagcttgaacccttctttgacatcaaatgggcctgcttccagc
ccatcttctgtcataccaattgcatcaaccgattctcagcagttggtttctggattatta
gggacctctgtttcacactctgcagttacctcaagcaccacaggtgttgaaccaagcagt
gcgggaactacaagtgctgtgcctgtagtagttacaggaagctcaggactacctgagaac
tcacctcaactatccaaaatgccacccattgtcgaaaatcaagcatctcaagattttgct
tctgcaaatggatcttctcctcaaaatattgaggaagctaaaaaagcattggctgaggtt
gggaaaaataatgtgattccatctgaggagaaaaccattgatgatgaaaccttggtatac
gcaaataagttggaagcaaaaaatgcatttaaagcactgctggaatctgtgaatgttcag
tctgattggacctgggaacaggcaatgagagaaatcatcaatgacaaaagatataatgcc
ctgaaaacacttggtgagcgaaaacaagcctttaatgagtatttgggccaaaggaagaag
cttgaggctgaagagagacggatgaagcagaaaagagcccgtgaagaattcacaaagatg
ttggaagagtgcaaggaacttacatcctccatgagatggagcaaagccattagtatgttt
gaaaatgacgaacgatataatgctgttgaaagaccaagagaccgagaagatttatttgaa
agctacatggtggaacttgagaggaaggagaaggaaaatgcggcagaggaacaccggcgg
aatatagcagaatatagaaaatttctggagtcatgtgattatgtgaaggtgaatagtcat
tggcgtaaaatccaagatcggttagaggatgatgatagatacttgcgacttgaaaaaatt
gatcgcttgctagtttttcaggactatattcgggacttggagaaagaagaagaggaacaa
agaagaatacagaaggaccgagtccgtcggggtgaaaggaaaaaccgtgatgcatttcgc
aagttgcttgaagaacatgttgctactggatttcttactgctaaaactcaatggcgagaa
tattgcttgaaggtcagggatttacctcaatatcaagctgttgcatcaaatacactgggt
tccaccccaaaagatttgtttgaggatgttgcagaggatcttgagaaacagtatcatgaa
gacaagacactcataaaagatacaattaagtcaggcaagatcattgtggtgactacatca
gtatttgaggagtttaaggctgctgtgttggaagatgctgcatgccaaacaatatctgac
atcaatttaaagcttatatttgaggagttgttagatagagctaaagagaaggaggagaaa
gaagtcaagaagcgccaacgccttgctgatgactttactaatctgttatacacattcaag
gatattactacttcctcaaaatgggaggattgcaagtcactttttgaggagactcaagag
tacaggtcaattggggacgaaagctatagtagagaaatttttgaggaatacatcacatac
ttaaaggaaaaagcaaaagagaaggaacgtaagcgtgaagaggagaagttcaaaaaggag
aaagaaagggaggagaaacggaaggagaaggagaaaaaagaaaaagatagagaacgagaa
aaggataagtcaaaggaacgccataggaaggatgaaacagatagtgatcaagacatggct
gacgtccatggttacaaagaggagaagaaaaaagaaaaggagaaggaaaggaagcatcgg
aaaaggcaccagagcagtatagatgacgtggattcggaaaaggaagataaggaagaatct
aaaaaatcacgaaggcatggcagtgaacgcaagaagtcaaggaagcatgcaaactctcct
gaatcagacaatgaaaaccggcacagacgacacaagagggagcactgggatgtatctagg
aaatctgggggtcatgaggaacttgaagacggagagctcggcgacgatgttgaaaactaa
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