Vigna angularis (adzuki bean): 108338607
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Entry
108338607 CDS
T04660
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108338607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108338607
Spliceosome [BR:
var03041
]
Complex B
Other components
Prp19-related factors
108338607
Complex C
108338607
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
zf-CCCH
RRM_3
Motif
Other DBs
NCBI-GeneID:
108338607
NCBI-ProteinID:
XP_017431077
UniProt:
A0A0L9UU98
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All DBs
Position
7:18958682..18962580
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AA seq
485 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHIDSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVSYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGTFFYNNPPPMQQERSYYP
SMDPQRMGALISSQDGPPGGPSGSGENKSSLEKQQMQHYARPMMPPPPGQYHHQYYSPYG
YMPPVPPYQQYPPPPYNTAVPPSQPPAPNHPYQHSTQPGSSQTESVQAAPAPAESGTSTS
GSQQQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaggttactcagagaccacgaagccgacggttgggagcgttctgatttccct
ataatatgcgaatcctgtctcggagacagcccctatgttcgaatgacaagggcagagtat
gacaaggagtgcaagatttgtacacggccattcactgtgtttagatggagaccaggcaga
gatgcgagatataagaaaactgagatatgtcagacatgtagtaaattgaaaaatgtctgt
caagtgtgccttctggaccttgaatatggactacctgttcaagtccgagacacagctctt
catattgattccaatgatgccattccaaaaagtgatgttaatagggagtattttgccgaa
gaacatgaccgtagggctagagctggtatagattatgaatcttcttatggcaaagcacgc
cctaatgatactatcctgaagcttcaaagaacaaccccttattacaaaagaaacagagca
catatttgcagtttctacataaggggtgaatgtaccagaggagcggagtgcccttataga
cacgagatgccagaaactggggaattgtctcaacaaaatattaaagatcgttattatggg
gtgaacgatccagtggccttgaagctacttggcaaggcaggggagatggccacactggag
gctcctgaggacgagagcatcaaaacactctatgttggtgggcttgatgctagggtcact
gagcaggatttgcgggaccacttctatgcccatggagaaattgaatctataaaaatggtt
ctgcaacgggcttgtgcttttgtatcatatactacccgagaaggtgcagaaaaggcagca
gaagaactctcaaacaaactggttattaaaggcctaaggctaaagctgatgtggggcagg
cctcagacatcaaaacctgagtcagatggctctgatcaagctaggcagcaggcatctgtg
gctcatagtggattgttgcctcgggcagttatatcacagcaacagaatcaggaccaaaca
caaggaacatttttctataacaatccaccacctatgcagcaggaaagaagctactaccca
tcaatggatcctcaaagaatgggtgctcttatttcatctcaagacggacctcctggtggg
ccttctgggtccggagagaacaagtccagtttggagaagcagcaaatgcaacactatgcc
cgaccaatgatgcctcctccacctggccaatatcaccatcagtattactctccatatggt
tatatgccgccagtccccccttatcaacagtacccgccacctccatacaatactgctgtt
cctccatcccagccgcccgctccaaatcatccttatcagcattctacgcaaccagggtct
tcacagacagagtctgtacaggctgcacctgccccagctgaatctggaacatcaacatca
gggtcacagcagcaatga
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