Vigna angularis (adzuki bean): 108338718
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Entry
108338718 CDS
T04660
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108338718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
var03021
]
108338718
03036 Chromosome and associated proteins [BR:
var03036
]
108338718
Transcription machinery [BR:
var03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108338718
Coactivators
SAGA/TFTC/STAGA complex
108338718
Chromosome and associated proteins [BR:
var03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108338718
STAGA complex
108338718
TFTC complex
108338718
SAGA complex
108338718
SLIK complex
108338718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
PALB2_WD40
WD40_like
Nbas_N
eIF2A
Cytochrom_D1
TAT_signal
Motif
Other DBs
NCBI-GeneID:
108338718
NCBI-ProteinID:
XP_017431261
LinkDB
All DBs
Position
7:complement(12614753..12625655)
Genome browser
AA seq
659 aa
AA seq
DB search
MDEDQIEGCVSGYLKQKGFAQNDDQLQLSKADSSLQPDTLNRSQLERGSARYHNGYGRLR
SWAYRSLESYKHELLRVLYPVFVHCFMDLVAKGHLQEAWNFFNTFREDHEMLHSRDLQKL
ELVLSPTHLEEMEFAHSLRQSKFNIKICRYSYELLLQHLHSMQSTTIIGIINEHISFQVT
AGQPSSISDDPEAVTLSGSIHDAVNQINQKEILWGMFEDSVEDHIDKAGALLSGTEKGEG
EGKEGDNDESKKRSIDVGKQGNSVKKVKKDKVSSATGKNAKPEANTISAAPRIKPEIPLP
TVSTDVELSILDDLRNRVQLSSVALPSVNFYTFVNTHNGLSCSSISHDGSLIVGGFSDSS
LKVWDMAKLEQQSTAHFSQGGNDMSQNEQIIGQNSGRRQYTLYQGHSGPVYAATFSAAGD
FLLSSSADKTVRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDR
TKPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLA
MSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVSHTSCVWSLAFSCEGSLLASGSADCTVK
FWDVTTGIKVPRNEENRSGNANRLRSLKSLPTKSASVYSLQFSRRNLLFAAGAVAKSGC
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagatcaaatagaaggttgtgtgagtgggtatctaaagcagaaagggtttgcg
caaaacgatgaccaacttcaactttccaaagccgattcctctcttcaacccgacactctc
aatcgctctcaattggagagaggttctgctagataccacaacgggtatggcagactgaga
tcatgggcatataggtcacttgaatcatacaagcatgaattactgcgtgtgctttatcca
gtattcgtccattgcttcatggatcttgtggcaaaagggcatcttcaggaagcttggaac
tttttcaatacctttcgtgaggaccatgaaatgttgcactcacgagaccttcagaaattg
gaactagttctttctcctactcatttggaggaaatggaattcgctcattcccttaggcag
agtaagttcaacataaagatatgtcggtattcctatgagcttctattgcaacatctacat
agtatgcaatccaccacaataattggtattatcaatgagcatattagcttccaagttaca
gctgggcaaccgagctcaatttctgatgatccagaagctgttaccctcagtggaagcatc
catgatgcagtaaaccagataaatcagaaagaaatcctttgggggatgtttgaagattct
gtggaagaccacatagataaggctggggccttgctttcaggcacagaaaagggtgaaggc
gaaggcaaagagggagacaatgatgagagtaagaaaaggtcaattgatgtaggaaagcaa
ggtaattcagtaaaaaaggtaaaaaaggacaaggtcagcagtgcaacagggaaaaatgct
aagccagaagctaacactatatctgcagcacctcgcattaaaccagagatacccttgccc
acagtttcaactgatgtagaactgtctatcctagacgatttaaggaatcgtgtacaattg
agtagtgttgctctcccttcagtgaacttctacacatttgtaaatacacataatggttta
agctgttcatcaatatcccacgatgggtcattgattgttggaggattttctgactcttcc
ctaaaggtctgggatatggcaaaacttgagcaacaatccactgctcatttttcgcaggga
gggaatgacatgtcacagaatgaacaaattattgggcaaaatagtgggagaagacagtat
acattgtatcaaggtcactcaggtccagtctatgccgccacttttagtgctgccggggat
tttcttctttcctcttcagcagacaaaacagttcgactatggagtacaaagcttaatgcc
aatcttgtttgttacaagggtcacaattaccctatctgggatgttcagtttagtcctgca
gggcattattttgccagctgttcacatgacagaactgccaggatttggtctatggacaga
acaaaacctttaagaataatggcaggacatttgtccgacgttgattgtgtgcagtggcat
cccaactgcaactacattgctactggctccagtgataaaacagttcgactgtgggatgtg
cagagcggggaatgtgttcgggttttcattggtcatagaagtatgattttgtctttggca
atgtcccctgatggtcgctacatggcatctggtgatgaagatggcacaatcatgatgtgg
gacctctctagtggctgttgtgtcacacctcttgtcagtcacacttcatgtgtctggtca
ctcgctttcagttgtgaaggttctcttctagcatctggatctgctgattgcacagtcaaa
ttttgggatgtaactacgggtataaaggttccaaggaatgaagaaaatagaagtggaaat
gctaacagactcagatcattaaaaagcctgccaaccaaatctgcttcagtttactctctc
cagttttctcgcaggaatcttctttttgcagctggagctgttgcaaaaagtggttgttag
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