Vigna angularis (adzuki bean): 108338889
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Entry
108338889 CDS
T04660
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11 isoform X1
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108338889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108338889
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108338889
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108338889
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF4857
Motif
Other DBs
NCBI-GeneID:
108338889
NCBI-ProteinID:
XP_052733554
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All DBs
Position
5:complement(31383110..31385831)
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AA seq
343 aa
AA seq
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MGVFSEDLNPIVIREVWASNIESEFELIRELIDRYPFISMDTEFPGVIFRPQVDPTKPYN
HHTRRPADHYRLLKTNVDALNLIQVGLTLSDSAGNLPGDAGNRFIWEFNFRDFDVARDAY
APDSIALLRRQGIDFERNTTNGIDSTRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKI
LTRQDLPTRLEEFLNVVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQ
AGSDSLLTWHAFQKIVDLYFVKDEHQKHAGLTFCFNANSSLTIKQIKVLSKPTVGYCQRY
IFELVLLSRVNRIQGFLRLNSWLKFLQTNSTSMPFFRLIIICF
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgttcagtgaagacctcaatccaattgtgatacgtgaagtatgggcatcgaat
atagaatctgaattcgaactcatccgagagttaattgatcgctacccttttatctccatg
gacactgagtttcctggagtgattttccggccgcaggttgatcctaccaaaccctacaac
caccacactcgccgccctgccgaccactaccgtctcctcaagaccaacgttgacgcgctc
aacctcatccaggtcggccttacactgtctgactcagccggcaacctccctggcgatgcc
ggaaatcgcttcatctgggagtttaatttccgcgactttgacgtggcgcgtgatgcttac
gcgccggactccatcgcacttctccgccgccaggggatcgacttcgagcgcaacaccacc
aacggtattgactcaactcgcttcgcggagctgatgatgtcttcaggactcgtgtgcaac
gacgccgtgagctgggtcaccttccacagcgcttacgatttcgggtatttggttaagatc
cttacccgacaggatttaccgacccggttggaggaatttttaaacgttgtgaaagtgttc
tttggagacaacgtttacgatgtgaagcacatgatgaggttctgtgatacactctacggt
ggtttggatcgggttgctcggacgcttaacgtggaccgcgccgtagggaagtgccaccag
gctgggtcagacagcttactgacctggcacgcgttccagaagattgtggatctttatttt
gttaaggatgaacaccaaaaacatgctggtctaactttctgctttaatgcaaattcaagc
ttgactattaagcaaattaaagtgttaagcaagcctactgttggctattgccagagatat
atttttgagttggtgttgcttagtagagttaacagaatccaagggttcctgcggctaaac
tcttggttaaagttcttgcaaacaaattctaccagcatgccatttttcagactcatcata
atatgtttttaa
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