Vigna angularis (adzuki bean): 108340342
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Entry
108340342 CDS
T04660
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108340342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108340342
03012 Translation factors [BR:
var03012
]
108340342
Enzymes [BR:
var01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108340342
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108340342
Translation factors [BR:
var03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108340342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
AAA_16
Post_transc_reg
ABC_tran
Motif
Other DBs
NCBI-GeneID:
108340342
NCBI-ProteinID:
XP_017433132
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All DBs
Position
5:complement(10673470..10702986)
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AA seq
1153 aa
AA seq
DB search
MRSSKFAVSLLIARAKSLQLHHLTCHCVASSSPTSTPLFRFFPSSIRNANAVATTRLFSS
YYSLEQFSDDEYDGDFENQQVSSTVANVDEWKWKLSMLLRSEKDQEIVSRDKKDRRDYEQ
IANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYL
DRLQLNSAKTTGSLDDGNSTNQVKEIDIDENDDSFVDESVMEKVLQKRSLRMRNMQRAWQ
ESPEGRKMLEFRKSLPSFMEKQGLLQAIAHNQVIVISGETGCGKTTQIPQYVLESQIESG
RGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFS
NYFGGAPTFRIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKLWKTQKQLAPRKR
KNQITSLVEDALSKSNFENYSSRARESVASWAPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNM
AEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYH
LYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRTVQNAIDF
LKMIGALDEKENLTNLGSFLSILPVDPKLGKMLIMGAIFRCFDPVLTIVAGLSVRDPFLL
PQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIH
SLRKQFSFILKDAGLVDADASMINKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTM
DDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTAVSDSILILFGGVLSNGIQ
AGHLKMLDGYVDFFMDPNLADCYLKLKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQELV
SGDQCEGRFVFGRESRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTN
EFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQPEDDNSPTDVTDNMLK
LLGKRRKSKRRHD
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagttcaaagtttgcagtgtctctgcttatagcacgtgccaagtcccttcaactt
catcacctcacgtgtcactgcgtcgcttcttcttctccaacttcaacgccactcttcagg
tttttcccttcttccatacgaaatgcgaatgccgtcgccaccacgcgcctcttctccagc
tactattccctcgaacagttttccgatgatgaatacgacggtgactttgagaaccagcag
gtatcgtctacggtggccaatgtagacgagtggaaatggaaactcagcatgctgttacgc
agcgaaaaggaccaggagattgtatcaagagataaaaaagataggagggactatgaacag
atagctaaccttgccaaaagaatggggctatacagtgagttgtttggaaaagtggtcgtt
gcaagcaaggtgcctcttcccaactaccgtccagatttggatgacaaacgtccacaaaga
gaggtggtgattccactaagcttgcaaaggagggttgagggtttgctgcaggagtacctt
gatagacttcagttaaattctgcaaagacaactggcagcctggatgatgggaactccacc
aatcaagttaaagaaatagacattgacgaaaatgatgattcttttgtggatgaatctgtc
atggaaaaggttctccaaaagaggagtttgaggatgcgcaatatgcaaagagcttggcag
gaatcacctgaaggcaggaaaatgttggagttccggaagtctctaccatcatttatggaa
aagcaaggtttacttcaagctatagcacacaatcaggtgatagttatatctggagagact
ggctgtggtaaaaccactcaaattcctcaatatgtattagaatcacagatagagtctggc
cgtggagcattttgtaacattatttgcactcagcctcgaaggatatcagccatggcagtg
tcggagagagtgtcagccgagcgtggagagcctcttggtgaaacagtgggcttcaaagtt
cgattagaaggaatgaaagggaaaaacacccatcttctattttgcaccagtggtatatta
cttagaaggttgctgagtgatcgtaatctgaatggtataacccatgtttttgtcgatgaa
attcatgaaagaggcatgaatgaagacttcttattgattgtgctaaaggatctgcttcca
aggcgtagggatttaaggttggttttaatgagtgccaccttgaatgctgagctgttttca
aattattttggaggtgctcctacatttcgaattccgggtttcacctatcctgttagagct
cactttttagaagatgtgttggaaatgactggatacaagttgacttccttcaaccaaatt
gatgattatggtcaagagaaactgtggaaaacacaaaagcaattggcaccacggaagagg
aaaaatcagatcacttctcttgttgaggatgctctttcaaaatcaaactttgagaactac
agctccagggcacgtgagtcagtggcatcttgggcacctgactgcatagggttcaatctc
attgaggctgttctatgccatatatgtcggaaggaacgtccaggtgctgtcttagtgttt
atgaccggatgggaggatataagttctctaagagatcaacttaaagcacatcctctttta
ggagatcccaataggattctacttctaacatgtcatggttcaatggcaacttcagaacag
aaactcatatttgagaaaccacctccaaatataaggaaagtaatacttgctacaaatatg
gctgaggcaagtataacaatcaatgacatagtttttgtggtcgattgtggaaaagcaaaa
gagaccacgtatgatgctttgaataacacaccttgtcttctaccttcttggatatcacaa
gcatctgcacgtcagagaaggggtagggctggtcgtgtgcagccaggagaatgctaccac
ctttaccccaaatgtgtttatgaagccttttctgaatatcaacttcctgaactactgaga
acacctttgaactctctttgcttgcaaataaaaagtttgcaggttgagagcattggagag
ttcttatcagcagctttacaggcaccggagccacgaactgttcaaaatgctattgacttt
ctaaagatgattggagcactggatgaaaaagaaaatcttacaaatctcgggagttttctc
tctatacttcctgtagatcccaagctgggcaaaatgttaataatgggagctatatttcga
tgctttgatcctgttcttacaattgtagctggccttagtgtcagggatcctttccttttg
ccccaagacaagagggatttagcagggacagcaaagtctaggttttctgccaaagattac
agtgatcatatggctcttgttcgagcatatgaaggatggaaagatgcagaaagagaagga
tcgtcttatgaatactgctggagaaattttctctctgcccaaactcttcaggctattcat
tcacttcggaagcagtttagcttcatcttgaaagatgctggcttggtagatgctgatgca
agcatgattaacaaattgagtcacaatcagtctcttgtccgtgctgtcatttgttctgga
ctctttcctggcatagcatcagtggtgcacagggagacatccatgtcatttaaaacaatg
gatgatggccaggttttattatatgctaattctgtgaatgcacgttaccagaccatccca
tacccatggttggtttttggtgagaaagttaaggtcaatgctgttttcatccgtgattcc
actgctgtatctgattcaatacttatcctttttggtggtgttctaagtaatgggatacag
gctgggcatctaaaaatgttagatggatatgttgacttcttcatggatcctaatttagct
gattgctatttgaagcttaaggaagagctcaataagcttatccagaagaagcttgaagat
cctagcattgacattcacaaggaagggaagtacttgatgcttgctgttcaggagctggtt
tcaggggatcaatgtgaaggaagatttgtgtttggccgtgaaagccggaagccaagggcc
tctaatgatgaaaataaattcacaaaagatgggacaaatcccaagagcttgctgcaaaca
ctgttgatgcgagcaggacactccccaccaaaatacaaaaccaaacatctcaagacgaat
gagtttagggcactggtggagttcaagggaatgcaatttgttggcaaaccgaagagaaac
aaacagcttgcagaaagggatgctgctatagaggcattggcttggttgactcatacttct
gataataatcagcccgaagatgataactctcctacggacgtcactgacaacatgctaaaa
ctcctagggaagcgtagaaaatcaaagcgacgccatgattga
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integrated database retrieval system
