Vigna angularis (adzuki bean): 108340343
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Entry
108340343 CDS
T04660
Name
(RefSeq) pre-mRNA-processing protein 40C isoform X1
KO
K12824
transcription elongation regulator 1
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108340343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
var03041
]
108340343
Spliceosome [BR:
var03041
]
Complex A
U1 snRNP components
U1 related factors
108340343
Complex B
108340343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
108340343
NCBI-ProteinID:
XP_017433133
UniProt:
A0A0L9V8R5
LinkDB
All DBs
Position
5:38658924..38675373
Genome browser
AA seq
975 aa
AA seq
DB search
MASPAWLPQEAKPPVSGETSLPMASPTPNSAHATPSTAPAAAPPFPHGVLQNANVSGSPQ
LSSTHNVIKSNSTVNPVVFQPPVPGVSSHAALSFSYNVPQSGGAFSSSQQHTQSSGKISE
SVAQDVTKLSSAASTPHSIPAHTSTTIMPPSDPNYRPTTSWMPTAMSFPLHPVMPTPGNP
GPPGLTSSSIISINTVVPSTGTDSSSAALPRPNMPISAIASDPTAPLKGLPYPSMPSMAA
PPQGLWLQAPQMSGVFRPPYLQYPAPFPGPFPFPARGITLPAVPIPDSQPPGVTPVSGGG
GTSTPASSNQLRGTTALQTEVISGPADDKKKLNAVVTQNEDAANNDQLEAWTAHKTEAGI
IYYYNALTGESTYDKPAGFIGEPHQVSAQPTPVSMMDLPGTDWLSVSTSDGKKYYYNNRT
KTSCWQIPNEVSELKKKQDGDVTKDQLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAA
LKPSNLQSPSSALDLIKKKLQDSGTPITSSSIPVPSVQTGSESNGSKAVESTSKGMQADN
SKDKQKDTNGAANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIV
FDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEALEDINYNTD
YQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKTQAMRAAAAASFKSMLKERG
DISFNSRWSRVKESLRDDPRYKSVRHEDREGLFNEYISELKAAEYATERETKAKREEQDK
LRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKD
PQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLLAEVLTTDAASHENEDGKTVLNS
WSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHSHDSREDKHTDAKGRNSLE
SSKHPLESGRSHDRR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgccggcgtggttgccgcaggaggcgaagccacctgtgtccggagaaacgtct
cttcctatggcttctcccactcctaattccgctcatgcaactccttctactgctccggca
gcggcacctccatttcctcacggcgttcttcagaatgccaatgtttcgggaagccctcag
ctgtcatcgacacataatgtgataaaatccaattcaacggtaaaccctgtagtgtttcaa
cctccagttcccggtgtctcgtcgcatgctgctctttcattttcatataatgttccccag
agtggtggtgctttttctagcagccaacagcatactcaatctagtggtaaaatctccgaa
tctgttgcacaggatgttactaaattgtcatctgcagcaagtaccccacattccatccct
gctcatacttctacaacgataatgcctccctctgatcctaattatcggccaactacttcg
tggatgcccactgccatgtcttttcctttgcatcctgtaatgcctactccaggaaatcct
ggccctcctggactaacatcatcttctataatttccatcaatactgttgttccatctaca
ggaacagattcttcctcagctgcattaccgagaccaaacatgccaatttcagccattgca
tcggatcctactgcccctctgaaaggtttaccctatccatccatgccttcaatggctgct
ccccctcagggactttggttacaggccccacagatgagtggagtctttagacccccatat
ttacaataccctgctccttttcctggcccctttccatttccagcacgtggtattactctc
cctgctgttccaatacctgattctcaacctcctggtgttacacctgtgagtggtggcggt
ggcacttctactcctgcttccagcaatcagctaaggggaacaactgctttgcaaacagaa
gttatttcagggccagctgatgataagaagaaattaaatgctgttgtcacccagaatgag
gatgctgctaataatgatcaattagaggcctggactgcccacaagactgaagcaggaatt
atatactattataatgccttgactggagaatcaacatatgataaacctgctggatttata
ggggagcctcaccaagtttctgctcagcccactccagtttcaatgatggatttgcctggt
actgattggctgtcggtctctactagtgatggaaaaaaatattactacaacaatcgaacc
aagactagctgctggcaaattccaaatgaggtgtctgaattgaaaaagaaacaagatggt
gatgttacaaaagatcagttaatgtcagttccaaatactaatgtattgtctgatagaggg
tctggaatggttactctgaatgctcctgctattaatactggtggtcgtgatgctgcagct
cttaaaccctctaatctacagagcccatcatcggctttggatttgatcaagaagaaattg
caggattcaggaacacctattacttcctcttctattcctgtgccatcagtacaaacagga
tctgaatcaaatggttcaaaagcagttgaatctacctctaagggcatgcaagcagataat
agcaaagataaacaaaaagatactaatggtgctgctaatgtttctgatacatcttcagat
tctgaagatgaagacagtgggccttcaaaggaggagtgcatcattcaattcaaggagatg
ctcaaggaacgcggagtggcaccattctcaaaatgggagaaagaattgccaaagatagta
tttgatccacgttttaaggccatcccaagttattctgctaggagatccttgtttgagcat
tatgttaaaacccgtgctgaagaagaacgcaaagaaaagcgtgctgcacagaaggctgca
attgaaggatttaagcaattactggatgaagccttagaggatattaactacaatactgat
tatcaaacttttcggaagaaatggggaaatgatccacggtttgaggcattggaccgcaag
gagcaagagcacctattgaatgaaagagtgcttcctttgaagaaagctgctgaagaaaag
actcaagcaatgcgtgcagctgctgcagccagttttaagtcaatgcttaaagagcgagga
gatatatctttcaactcacgttggtccagggttaaagaaagtttaagggatgacccaaga
tataaatctgtgaggcatgaggatagggaaggtttgttcaatgagtatatatctgaactg
aaagctgctgaatatgcgacagaaagagagaccaaagctaaaagggaggagcaggacaag
ctcagggaaagagaacgagagctgcgcaaaaggaaggaaagagaagaacaggaaatggag
agagtgcgactaaaaattcgaagaaaggaggcagttacttcttttcaagctttactcgtg
gagacaatcaaagatcctctggcatcatggacggaatcgaaacctaaattagaaaaggat
cctcaaggacgagcaactaatcctgaacttgattcttctgatacggaaaaattgtttcgg
gaacacgtgaagatgcttcaggagcgatgtgctcacgaatttagagttctcttagctgaa
gtattgaccactgatgctgcatctcatgaaaatgaggatggaaaaacagtgctcaattct
tggtctacagctaagcgagttctaaaatctgatccaagatataacaaagttccaagaaaa
gaaagagaagcattgtggcgcaggtatgcagaggatatgctgcggcgtcaaaaggcatct
cattcacatgattccagggaagataaacatactgatgctaaaggtagaaattctctagaa
tcttccaaacatccattggaatctgggagatcgcacgaccgaagataa
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