Vigna angularis (adzuki bean): 108340987
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Entry
108340987 CDS
T04660
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108340987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108340987
Enzymes [BR:
var01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108340987
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108340987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
ZGRF1-like_N
Motif
Other DBs
NCBI-GeneID:
108340987
NCBI-ProteinID:
XP_017434066
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All DBs
Position
6:complement(19996840..20001137)
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AA seq
724 aa
AA seq
DB search
MKPHKLPSPSLSRVLARALSPATPATSATPATPTIPTQCDLAFPLKTVTTANFEPSLAEL
RRHVRTSDFVAIDLEMSGITSAPWRESFEFDRSDVRYLKVRDSATKFAVLQFGVCPFRWD
SSNHSFVAYPFYVFPRQEHAGLGPCDEFLWQTTSMDFLAKYQFDFNACIHEGISYLSREQ
EREALRNLNSALDSEWSDICKLKDVRDMPLHSASDILFTARMKNKFRRWHDGLLHEQNLE
DQIQGITEDSKFQEIFFEMHPALRLNGFTSHQLKLIHLVIRKHFKDLSYISVNSEASGLQ
HLVVYTDSKDELNLLLKKVKEENHGAENMKIQAAVGLRHVIDLLSSEQKLIVGHNCFLDI
AHVYSKFIGPLPGTPEEFVTSVNKCFPHIVDTKILLNTNFMLQEKMKRSRKSLAAAFTSF
CPQIAAGSGTSYLGSLPHVKVDVEVDEVRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLG
IDYKLHDSSKQLALDEKLQNYINRLYLSWMHGDIIDLTTGNKVADSSPSHSLRKRYPKIL
FENIVIIWGFPSTLKANEIRMCISKVFGPTSIVSLFHLDATAVFVQFSVIQLVSDFLSLK
NTLERSDGALLVLHPLSKLLEGGNTCAANYGTYKEICGSPLSECLFADQAKAVGIKWKTK
LPEYKVVLGAEEHENSSVRGNVNIAMENVERTKPNKIDQLRNAPSRRQVSPYGDEDSCVA
EGNL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaagccacacaaacttccctctccgtcactctcacgtgtgcttgcacgtgccctatcc
cccgccacccccgccacctccgccacccccgccacccccaccatccctacgcaatgcgat
ttggcatttcctttgaagacggtgaccactgcaaacttcgaaccgtcgctggcggagctc
cgtcgccacgtccggacgtcggacttcgtggccatcgacctcgagatgagcggcatcacc
agcgctccctggcgcgagtccttcgagtttgaccgctccgacgtgcgctacctcaaagtc
cgagactccgccaccaagttcgccgtccttcaattcggcgtttgccccttccgttgggat
tcctctaatcactccttcgtcgcgtatcctttctatgtttttcctcgacaggagcatgca
ggtctgggtccgtgcgatgaatttctctggcagactacttcgatggatttcttggctaaa
taccagtttgattttaatgcttgcatacacgaaggaatatcttatttatccagagaacaa
gaaagggaagccttaaggaatttgaattctgcacttgatagtgagtggtcagacatttgt
aaattaaaagatgtcagggacatgccgttgcacagtgcatcagacattttgttcactgca
cgaatgaaaaacaaattccgccgatggcacgatgggttattacatgagcaaaatctagaa
gaccaaattcaaggaattacagaagactcaaaatttcaagagatattttttgagatgcat
ccagctcttaggcttaatggattcacctctcaccagcttaaattgattcatttggtcatc
agaaaacacttcaaagatctttcttatatcagtgtgaacagtgaggcttccggtttacag
catttagttgtgtatacagactcaaaggatgaattgaatttacttctgaaaaaagtgaaa
gaagaaaatcatggggcagaaaatatgaaaattcaagctgctgtgggacttcgccatgtt
attgatctcctttcatcggaacagaagttgattgttggtcacaattgttttctagatatt
gctcatgtctacagcaaatttataggccctcttcctggtactcctgaagagtttgttacc
tcagttaacaagtgctttccacacattgttgacaccaagatacttctgaacactaatttt
atgctccaagaaaagatgaaaagatccagaaaatcactggcagctgcattcacttcattt
tgccctcaaattgctgctggttcaggaaccagttatctaggttcactcccacatgtgaaa
gtggacgttgaagtcgatgaagtgagatcatccagctggaaccctggaggcaagcatgag
gcaggatatgatgccttcatgactggatgcatctttgcccagttatgcagtgatttaggt
attgattacaaactccatgattcttcaaaacaattagcccttgacgagaaactgcagaat
tatattaatcgtctatatcttagttggatgcatggggacattattgatctaactactggt
aataaggttgccgattcttcacccagtcatagcctcaggaagcggtacccaaaaattttg
tttgagaacattgtcattatttggggatttccttctacgctgaaggcaaatgaaataaga
atgtgcatatctaaagtatttggtccaacttctatagtttctctcttccacctggatgca
actgcagtattcgttcagtttagtgtaatacaactagtttctgattttctttcattgaag
aacaccttagagagaagtgatggtgcactattggttttgcatccactgtcaaaacttttg
gaaggtggaaatacatgtgctgctaattatggtacttataaagaaatttgtggctcacct
ttatcagaatgcctgtttgctgatcaggcaaaggcagttggtataaagtggaagaccaag
ttgccagaatacaaggtagtattgggggccgaagaacatgaaaattcaagtgtaagaggt
aatgtaaatattgctatggagaatgtggaaaggaccaagccaaacaaaattgatcaattg
cgaaatgctccatctcggagacaagtctccccatatggggatgaagattcttgtgttgca
gaaggcaacttgtga
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